Gene Information

Name : fliI (WSI_02550)
Accession : YP_007599100.1
Strain : Candidatus Liberibacter asiaticus gxpsy
Genome accession: NC_020549
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.14
Position : 567434 - 568750 bp
Length : 1317 bp
Strand : +
Note : COG1157 Flagellar biosynthesis/type III secretory pathway ATPase

DNA sequence :
ATGCAGAAAAATTTGGAAACGTTAGCACAATTAGCAGAGGACTATTCTAAGAATCTAGTGGTTCAAGGTGGTTATATAAG
TAGCATTACGTCTGTTTATTATACGGTTACATGCTTATCTCAATACGTGTGTTTGGGGGATTTTGTTGTCCATCAAGGAA
AAAATTCGGATAATTTAGGTCAGGTCATACGTATTAATCTGGATATTGTATACATTTGTCCCGTAGGAATAGGGGAAGAA
ATAAGTTTAGGGGATTTGGTCTTTCATTGGGGGCGCTTTCGAATTTCGCCTAGTGCATGTTGGTGTGGACGTGTCATAAA
TGCATTAGGAAAGCCTATTGATGGAGATGATTCATTAGGGAAAGGTGATCTATCCATGGAAATTATGTCGAAAGTTCCAC
CTGCTATGAATCGTCAACGAGTTGAGAAAGGATTTAAAACGGGAATACGTGTTATTGACATATTTACCCCACTTTGTCAT
GGACAACGTATTGGTGTTTTTGCTGGTTCTGGAATAGGGAAATCAACGTTGTTGTCAATGTTTGCTCGTTCTGATTGTTT
TGATAAAGTTATTATATCTTTAGTAGGTGAGCGTGGACGTGAAGTACGTGAATTTATTGAAGATTATCTTGGAGATAATT
TAAAAAAGTCAGTTGTAGTAGTAGCAACAAGTGATGAGAGTCCAATTCTTCGTAAAATGGCACCATTAACAGCTGTCACT
ATTGCGGAGTATTTTTCTTCTAAAGGAGATAATGTACTCCTAATACTAGATAGTATTACAAGGTTTGCACATTCTATACG
AGAAATTGCGACAAATTCTGGGGAATTACCTGTTGCACGAGGATATCCTACTTCAGTATTTTCTGAATTACCTCGCCTTT
TAGAGCGTATTGGTCCTAGCGAAAAAGAGAAAGGGAACATTACAGCTGTTATTTCAGTCCTTGTAGACGGAGATAATCAT
AATGATCCGATAGCGGATTCTGTTCGTAGCATTCTTGATGGGCATATTGTTTTAAACCGTTCTTTGGCAGAAGAGGGACG
CTATCCCCCCGTAGATCCTCTTGCATCGGTTTCTCGGCTTGCTGATAAGGCTTGGAGTGCTGATGAGAAAAAATTGGTTT
CTTCTTTAACCCATCTTATCCATCGATTTGAGGAAACTCGAGATATTCGTCTTATAGGTGGATATCGTCCTGGAGTTGAT
CTCATTCTGGATAAAGCTGTTCATCAAGTACCTATTATTTATGATTTTTTGAAACAATCTCCATCGGACTTATCTTCAGA
AGATGTTTTTCAGGAAATAACAAAAAAATTACAGTGA

Protein sequence :
MQKNLETLAQLAEDYSKNLVVQGGYISSITSVYYTVTCLSQYVCLGDFVVHQGKNSDNLGQVIRINLDIVYICPVGIGEE
ISLGDLVFHWGRFRISPSACWCGRVINALGKPIDGDDSLGKGDLSMEIMSKVPPAMNRQRVEKGFKTGIRVIDIFTPLCH
GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVGERGREVREFIEDYLGDNLKKSVVVVATSDESPILRKMAPLTAVT
IAEYFSSKGDNVLLILDSITRFAHSIREIATNSGELPVARGYPTSVFSELPRLLERIGPSEKEKGNITAVISVLVDGDNH
NDPIADSVRSILDGHIVLNRSLAEEGRYPPVDPLASVSRLADKAWSADEKKLVSSLTHLIHRFEETRDIRLIGGYRPGVD
LILDKAVHQVPIIYDFLKQSPSDLSSEDVFQEITKKLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-60 46
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-62 46
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-62 46
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-62 46
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-61 46
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-62 46
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-62 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-62 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-57 44
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-57 44
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-57 44
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 3e-57 44
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 7e-57 44
escN AAC38383.1 EscN Virulence LEE Protein 7e-57 42
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-59 41
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-55 41
escN AAK26715.1 EscN Virulence LEE Protein 2e-55 41
escN AAL57542.1 EscN Virulence LEE Protein 2e-55 41
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-55 41
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-55 41
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-55 41
escN AAC31513.1 L0034 Virulence LEE Protein 8e-57 41
escN NP_290268.1 hypothetical protein Virulence LEE Protein 1e-56 41
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 8e-57 41
ECs4568 NP_312595.1 EscN Virulence LEE Protein 1e-56 41
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-56 41
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-44 41
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-44 41
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 4e-44 41
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 4e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliI YP_007599100.1 flagellum-specific ATP synthase VFG0515 Protein 1e-57 44
fliI YP_007599100.1 flagellum-specific ATP synthase VFG2331 Protein 1e-56 44
fliI YP_007599100.1 flagellum-specific ATP synthase VFG0730 Protein 4e-57 42
fliI YP_007599100.1 flagellum-specific ATP synthase VFG0812 Protein 4e-57 41
fliI YP_007599100.1 flagellum-specific ATP synthase VFG0555 Protein 2e-44 41