Gene Information

Name : D805_1595 (D805_1595)
Accession : YP_007594302.1
Strain : Bifidobacterium thermophilum RBL67
Genome accession: NC_020546
Putative virulence/resistance : Unknown
Product : rRNA large subunit methyltransferase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1968291 - 1968770 bp
Length : 480 bp
Strand : +
Note : COG1576 Uncharacterized conserved protein

DNA sequence :
ATGAACATCGACATCATCGCCCCTGGCCGCATCAAGGAACGGTATCTGCGCGACGCGATCGACGAATACTCGAAACGCCT
GTCGCGCTTCTGCAAGCTGAACATCTACGAAGTGGCAGACGAGAAAACGCCCGAACACGCGACGCCCGGCACCGACGAGC
TCATCAAGCGCAAGGAGGGCGAGCGCATCGCGAAACATATCAAGGACGGCGCGTATGTGATCGCCCTTGCGATTGATGGG
CAGATGCTCGGCTCGGAACGGTTCGCAGCCAAGCTCGAAGACCTCACGGTGCACGGGGTGAGCCACATCCAGTTCATCAT
CGGCGGGTCGCTGGGGCTCGACCCCGCCATCCTCAAGCGCGCGGACTGGAAGCTGAGCTTCTCGCCCATGACTTTCCCGC
ATCAGCTCATGCGCGTGATCCTGCTCGAGCAGGTCTACCGCGCGTTCAAGATCAATGCGCACGAGCCGTACCATAAGTAA

Protein sequence :
MNIDIIAPGRIKERYLRDAIDEYSKRLSRFCKLNIYEVADEKTPEHATPGTDELIKRKEGERIAKHIKDGAYVIALAIDG
QMLGSERFAAKLEDLTVHGVSHIQFIIGGSLGLDPAILKRADWKLSFSPMTFPHQLMRVILLEQVYRAFKINAHEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 3e-36 53
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 1e-36 52
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 1e-36 52
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-36 52
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 1e-36 52
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-36 52
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 1e-36 52
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 1e-36 52
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 1e-36 52
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 1e-36 52
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 1e-36 52
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 1e-36 52
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 1e-36 52
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 3e-36 52
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 3e-34 51
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 3e-35 51
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 3e-36 50
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 3e-36 50