Gene Information

Name : R2APBS1_0088 (R2APBS1_0088)
Accession : YP_007588507.1
Strain : Rhodanobacter sp. 2APBS1
Genome accession: NC_020541
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 87854 - 88543 bp
Length : 690 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGAACATCCTGCTGATCGAAGACGACGCCGAGACCCAGGCCTATATCACCAGGGAGCTGACGAAACTTGGCCATGTGGT
CGAACAGACGATGGACGGCCGGGAAGGATTGCAGCGCGCCTCATCGCAGGAACACGACGTACTCGTCATCGATCGCATGT
TGCCGGGACTTGACGGCATGAGCCTGGTGAGAGCGTTGCGGTCGGCACGCGTGGTTACGCCGGTCTTGATGCTGACGGCG
TTGGGCGACGTGGATCAGCGCGTCGAAGGCATCGACGCCGGCGCCGACGACTATCTTTCGAAACCCTTCGCATTCAGCGA
ACTGGCGGCTCGCGTCGGTTCGCTGGCAAGGCGGATGCAAATGGCGGCGCCTTCGGAGACGCTGCTGCGCGTGGCCGATC
TCGAACTGGATCTGCTCAAGCGCGAGGCCTGCCGGGGCGGTCATGTCATCGACCTGCAGGCGCGTGAAATCCGCCTGCTC
GAATACCTCATGCGTCATGCCGGCCACATCGTCACCCGCGCAATGCTGCTCGAAAACGTGTGGGAATATCAATTCGATCC
ACGGACCAGCGTCGTGGAGACGCACATGAGCCGGCTTCGCGCCAAGATCGACCGCGGCTTCCCCGGCGGCGAACTCATTG
ATACGGTGCGGGGCGCAGGTTACATACTGCGCTTGCCGGACAGACACTGA

Protein sequence :
MNILLIEDDAETQAYITRELTKLGHVVEQTMDGREGLQRASSQEHDVLVIDRMLPGLDGMSLVRALRSARVVTPVLMLTA
LGDVDQRVEGIDAGADDYLSKPFAFSELAARVGSLARRMQMAAPSETLLRVADLELDLLKREACRGGHVIDLQAREIRLL
EYLMRHAGHIVTRAMLLENVWEYQFDPRTSVVETHMSRLRAKIDRGFPGGELIDTVRGAGYILRLPDRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-33 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-32 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 1e-36 48
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 1e-33 46
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 6e-40 45
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 2e-37 45
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 1e-42 44
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 1e-36 41
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 1e-33 44
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 1e-29 42
R2APBS1_0088 YP_007588507.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 1e-31 41