Gene Information

Name : R2APBS1_0545 (R2APBS1_0545)
Accession : YP_007588949.1
Strain : Rhodanobacter sp. 2APBS1
Genome accession: NC_020541
Putative virulence/resistance : Virulence
Product : peroxiredoxin
Function : -
COG functional category : -
COG ID : -
EC number : 1.11.1.5
Position : 600650 - 601150 bp
Length : 501 bp
Strand : +
Note : PFAM: Redoxin

DNA sequence :
ATGTCCCAGGTCACGTTCAAGGGCCAGCCGATCAGCGTCGACGGCCAGTTTCCCGCGGTCGGTTCGACCGCGCCGGCATT
CAGCCTGGTCGGCGGCGACCTGTCCGACGTGGCGCTTTCCGGCTTCGCTGGCAAGCGCAAGGTGCTGAACATCTTCCCCA
GCATCGACACCGGGGTGTGCGCCGCCTCGGTGCGCCGTTTCAACGAACTGGCCGGCAAGCTCGACCACACCGTGGTGCTG
TGCATCTCGGCCGACCTGCCGTTCGCGCAGGCACGCTTCTGCGGCGCCGAGGGGCTGGAGCGGGTGACCAACCTGTCGCT
GATGCGCGGGCGCCAGTTCCTCAACGACTACGGCGTGGCGATTGCCAGCGGCCCGCTGGCCGGATTGGCCGCGCGCGCGG
TGCTGGTGCTGGACGGCCATGACAAGGTGCTGCACGCCGAGCTGGTCAGCGAGATCGGCCACGAGCCGAACTACGACGCG
GCGCTGAAGGCGCTGGGCTGA

Protein sequence :
MSQVTFKGQPISVDGQFPAVGSTAPAFSLVGGDLSDVALSGFAGKRKVLNIFPSIDTGVCAASVRRFNELAGKLDHTVVL
CISADLPFAQARFCGAEGLERVTNLSLMRGRQFLNDYGVAIASGPLAGLAARAVLVLDGHDKVLHAELVSEIGHEPNYDA
ALKALG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 4e-30 48
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 2e-30 48
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 3e-30 48
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 1e-30 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R2APBS1_0545 YP_007588949.1 peroxiredoxin VFG0087 Protein 6e-31 48