Gene Information

Name : R2APBS1_3892 (R2APBS1_3892)
Accession : YP_007592178.1
Strain : Rhodanobacter sp. 2APBS1
Genome accession: NC_020541
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4154790 - 4155806 bp
Length : 1017 bp
Strand : -
Note : PFAM: Phage integrase family; TIGRFAM: integron integrase

DNA sequence : 
ATGAGTTACCCGGGTGAAAGTGAGGGTGTAACGGGGGAAAAAACGCCGCGGTTGCTGGATCAGGTGCGTGCGCGGTTGCG
CTTGAAGCATTACAGCTTGCGGACGGAGCGCGCGTATGTGGGCTGGATTCGGCGGTTCATCCTGGCCCATGGCAAGCGGC
ATCCGCGCGACATGGGGGTGGCGGAGGTCGAGGGCTTTCTGAGTACGTTGGCCGTCGAGGGCAAGGTGGCGGCCGGCACG
CAGAACCAGGCGCTGTCGGCGCTGTTGTTTCTGTACAAGGAGGTGTTGTCGATCGAGTTGCCGTGGATGGAGACGGTGGT
GCGGGCGAAGCGGCCGCAGCGGGTGCCGGTGGTGCTCTCGCGGGACGAGGTGAACCGGCTGCTGGCGATGCTGGATGGCC
GCTTCGGCCTGATGGCCTCGCTGTTGTACGGCTCGGGCATGCGGCTGATGGAATGCGTGCGGTTACGCGTGAAGGACGTG
GATTTCGAGCTCAACCAGATTTGCGTGCGCGACGGCAAGGGCGGCAAGGATCGGCATGTGCCGTTGCCGCGGCGCCTGCA
TGAAGCACTGCAGGCGCAGCTGGAGCGGGTGCGCCTGGTCCACCAGCAGGATCTGGCAGCGGGCCTGGGCGCGGTGTGGC
TGCCGCATGCGCTGGCGCGCAAGTATCCGTCGGCGCCGCGCGAGCCGGGCTGGCAGTATGTGTTTCCGTCGGACCAGCTG
TCGCGCGATCCGCGTGATGGCGAGCGGCGGCGCCATCACGTGGACGAGGCCGGCCTCCAGCGCGCCGTACGCAACGCGCG
GCTCAAGGCCGGCATCGTCAAGCCGGCCACCTGCCATACCCTGCGCCACTCCTTCGCCACCCACCTGCTGGAGGCCGGGC
AGGACATTTTCTGCATGCCCATCAAATCGTGTCGCGACGGGGCGCTGACAGTTCTCTCAAGTTACAGTTGCCAGAACTAC
ATGAGTATCCCTCCGTGCCTTTGCGCGTCGTCCGTCCGAATTCAAACCGACTTATAG

Protein sequence : 
MSYPGESEGVTGEKTPRLLDQVRARLRLKHYSLRTERAYVGWIRRFILAHGKRHPRDMGVAEVEGFLSTLAVEGKVAAGT
QNQALSALLFLYKEVLSIELPWMETVVRAKRPQRVPVVLSRDEVNRLLAMLDGRFGLMASLLYGSGMRLMECVRLRVKDV
DFELNQICVRDGKGGKDRHVPLPRRLHEALQAQLERVRLVHQQDLAAGLGAVWLPHALARKYPSAPREPGWQYVFPSDQL
SRDPRDGERRRHHVDEAGLQRAVRNARLKAGIVKPATCHTLRHSFATHLLEAGQDIFCMPIKSCRDGALTVLSSYSCQNY
MSIPPCLCASSVRIQTDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 3e-64 53
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 3e-64 53
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 7e-64 53
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 3e-64 53
intI YP_001844881.1 integrase Not tested AbaR20 Protein 3e-64 53
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 3e-64 53
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 3e-64 53
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 3e-64 53
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 3e-64 53
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 3e-64 53
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 3e-64 53
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 3e-64 53
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 3e-64 53
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 5e-64 53
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 3e-64 53
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 5e-64 53
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 2e-63 52
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 2e-63 52
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 2e-63 52
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 2e-63 52
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 2e-63 52
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 2e-63 52
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 3e-63 52
intI1 AAK02045.1 integrase Not tested SGI1 Protein 2e-63 52
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 2e-63 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R2APBS1_3892 YP_007592178.1 integron integrase VFG1028 Protein 2e-63 52