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Name : R2APBS1_3887 (R2APBS1_3887) Accession : YP_007592173.1 Strain : Rhodanobacter sp. 2APBS1 Genome accession: NC_020541 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease, HsdR family Function : - COG functional category : - COG ID : - EC number : - Position : 4145366 - 4148581 bp Length : 3216 bp Strand : + Note : PFAM: Domain of unknown function (DUF3387); Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family DNA sequence : ATGACACCGATCCTGCTGGAGGACCACCTGGAACAGGCTGCGCTGCAGTGGCTGGCCGGCCTGGGTTGGGAGGTGGCGCA CGGCCCGGATATTTCGCCGCCGGATGCGCACACGCCAGGCAGCGAGCGGGACAGTTACCGGCAGGTGGTACTGGAGCATC GGCTGCGCGACGCGATCCGTCGACTGAATCCGCGGATTCCCGCCACGGCACAGGATGAGGCGCTGCGGATAGTGCTGAAC CCCAACATCCCGGGCCCGTTGCAGGCGAACCGCCAACTGCATCGCTGGCTGACGGAAGGCGTGCCGGTGCAGTTCCAGCA GGGCAACGAGACGCGTGGCGACCTCGTGCGGCTGGTCGATTTCGACGATGTACGCGGCAACGACTGGGTGGCGGTCAACC AGTTTTCCATCCAGGGGCCGAAACGCACGCGGCGACCGGATCTGCTGCTGTTTCTAAACGGCCTGCCGATCGTACTGCTT GAGCTGAAGAACCCGGGCGACGAGAACGCGGATATCTGGTCGGCGTTCAACCAGGTGCAGGCGTACCGGGAGGACATCCC CGACCTGTTCATCTACAACACGCTGGTGGTGATCTCCGACGGTATTCGCGCGCGGATGGGCTCGCTCAGCGCCGAGCGCG AACGCTACATGGCATGGCGCACGATCGACGGCGCGCAGACCGATCCGCTGGGCGAGATGCGCGAGTTGGAAACGCTGGTG CATGGGGCATTCGACCGCGCGCTGCTGTTGGCATACCTGCGCAACTTCATCTTGTTCGAGGACGACGGTGCCCTGGTCAA GAAGGTGGCCGGATATCACCAGTTCCATGCGGTACGCGCGGTGGTGGAAAGCGTACTGGCGGCATCGAAGCCGGGCGGGT CGCGCAAGGGCGGCGTGGTGTGGCATACGCAGGGCGCGGGCAAGAGCATCGAGATGACCTGCTTGGCCGGCACCTTGATG CAGCACCCGGCGATGGGCAACCCGACCATCGTGGTGGTGACCGACCGCAACGATCTGGACAACCAGTTGTTTGGCGTCTT CGCTGGCGTTGCCGACCTGCTGCGCGAAACACCGGTGCAAGCCGATACGCGGCCACGTCTGCGCGAACTGCTGGGCAACC GTCCGTCCGGCGGCATCATCTTCACCACGATCCAGAAATTCACGCCGGGCGAGGACGAGGATGTGTTTCCGGTGCTGTCC GAGCGGCAGAACATCGTGGTCATCTGCGACGAGGCGCATCGCACGCAGTACGGCTTCGAGGCGAAGCTGACCGGCGATCT CGCCAAGGCGAAGCCCGCGAAGATGGCGGCGGATGCGGCAGGCTCGGTGGCGATGGCGGCGCTGATGTCGCACGAGGCAT CCGCCAGTTACGCGAGCAGCGTGCGCTACGGCTACGCCCAGCACCTGCGTGATGCGCTGCCAAACGCCACCTTTGTCGCG TTCACCGGCACGCCGGTGTCGTTGACCGATCGCGACACGCGCGCCGTGTTCGGTGACTACGTGCATGTCTACGACATCGA GCAGGCGGTGAAGGACGGTGCCACCGTACCGATCTACTACGAGTCACGACTGGCGAAGCTCGAACTGAGCGACGGCGACA TCGACGCGCTCGACGAGGAAGTCGACGAGTTGAACGAGGGCGCGATCGACGATCCCTCGCATGCAGCGCGCATTCGCCGC TGGGCTGCGCTGGAGAAGGTGGTGGGTGCCGCGCCGCGCATCCAGAAGGTGGCCAGCGACATTGTCGAGCATTTCGAGAA TCGCCTGGCCGCGATGGACGGCAAGGCCATGATCGTGGCGATGAGTCGCGAGATCTGCGTGCACCTGTACGACGCCATCG TGGCGTTGCGGCCTGAATGGCACGCCGCCGATCCCGAAAAGGGCGTGATCAAGATCGTGATGACCGGCTCGGCCGCCGAC AAGCCGATGCTCAAGCCGCATGTGTATCCGAAGGAAACGCGCAAGCGGCTGGAGCGACGCTACAAGGACTCCGCGGACCC GTTCAAGCTGGTGATCGTGCGCGACATGTGGCTGACCGGCTTCGATGCACCCTGCCTACACACCATGTACATCGACAAGC CGATGCGCGGGCACAACCTGATGCAGGCGATCGCACGGGTGAACCGGGTGTTCAAAGACAAGCCCGGCGGCCTGGTGGTC GACTACATCGGCATTGCCAACGAGTTGAAGCAGGCGCTGGCCGATTACACCCAGGCCAAGGGCAGAGGCAGCCCCACGAT CGACGCCGAAGAGGCGCTGGAAGTGCTGGTGGAGCGGATGGAGCTGCTGCACGGCATGCTGCACGGCTACGACTATGCGG CGTTCCGCGCTCAGGCCTGGGCGCTCCTGCCCGGCGCGGCAAACCACGTGTTGGGGCTGGATGACGGCAAGCAGCGTTTT GCCGATCAGGTGTTGGCGGCCACCAAGGCGTTCGCACTGTGCTGCACGCTGGATGCGGCGCTGGCGTATCGTGATGAGCT GGCGTTCCTGCAGGCGATCAAGTCGGCGATCACCAAGCATGCGACCACCGACAAGAAGCTCAGCGACGAGCAGAAGGAAC ATGCACTGCGCCAGATCATCTCGCGCGCCGTGGTGTCCGATCAGGTCATCGACATCTTTGCCGCCGCCGGCCTGAAGCGA CCGGATATCGGCGTGCTGTCGGAGGAGTTCCTGCAGGACATGCGCCATATGAAGGAACGCAACCTCGCAGTGGAGCTCCT GGATCGGCTGCTGAAGGGCGAGATCAAATCGCGCTTCAAGACCAACGTGGTGCAGAGTGCGAAATTCTCGGAGCTGCTGC AGGCATCGTTGACCCGCTACCGCAACCGTGCGATCGAAACGGCGCAGGTGATCGAAGAGCTGATCGCGATGGCGAAGAAG TTCCAGCAAGCCGCCGAACACGGTGACGCGCTGGGACTCAATCGCGATGAGGTCGCCTTCTACGACGCACTAGCGAACAA CGAATCCGCCGTGCGTGAGCTCGGCGACGAGACATTGCGCAAGATTGCGGTAGAGCTTACCCAGAAGCTACGCAACTCCG TCACAGTGGATTGGGCGGTCCGTGACTCGGTACGCGCCAAGCTGCGGGTGATGGTGAAGACCTTGCTGCGCCGCTACAAG TATCCGCCGGACAAGCAGGATGAGGCCGTGGAGATCGTATTGCGGCAAGCTGAGACTTTGACAAATACTTGGGCGGGTGC GGAGCAGCTAGGTTGA Protein sequence : MTPILLEDHLEQAALQWLAGLGWEVAHGPDISPPDAHTPGSERDSYRQVVLEHRLRDAIRRLNPRIPATAQDEALRIVLN PNIPGPLQANRQLHRWLTEGVPVQFQQGNETRGDLVRLVDFDDVRGNDWVAVNQFSIQGPKRTRRPDLLLFLNGLPIVLL ELKNPGDENADIWSAFNQVQAYREDIPDLFIYNTLVVISDGIRARMGSLSAERERYMAWRTIDGAQTDPLGEMRELETLV HGAFDRALLLAYLRNFILFEDDGALVKKVAGYHQFHAVRAVVESVLAASKPGGSRKGGVVWHTQGAGKSIEMTCLAGTLM QHPAMGNPTIVVVTDRNDLDNQLFGVFAGVADLLRETPVQADTRPRLRELLGNRPSGGIIFTTIQKFTPGEDEDVFPVLS ERQNIVVICDEAHRTQYGFEAKLTGDLAKAKPAKMAADAAGSVAMAALMSHEASASYASSVRYGYAQHLRDALPNATFVA FTGTPVSLTDRDTRAVFGDYVHVYDIEQAVKDGATVPIYYESRLAKLELSDGDIDALDEEVDELNEGAIDDPSHAARIRR WAALEKVVGAAPRIQKVASDIVEHFENRLAAMDGKAMIVAMSREICVHLYDAIVALRPEWHAADPEKGVIKIVMTGSAAD KPMLKPHVYPKETRKRLERRYKDSADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPGGLVV DYIGIANELKQALADYTQAKGRGSPTIDAEEALEVLVERMELLHGMLHGYDYAAFRAQAWALLPGAANHVLGLDDGKQRF ADQVLAATKAFALCCTLDAALAYRDELAFLQAIKSAITKHATTDKKLSDEQKEHALRQIISRAVVSDQVIDIFAAAGLKR PDIGVLSEEFLQDMRHMKERNLAVELLDRLLKGEIKSRFKTNVVQSAKFSELLQASLTRYRNRAIETAQVIEELIAMAKK FQQAAEHGDALGLNRDEVAFYDALANNESAVRELGDETLRKIAVELTQKLRNSVTVDWAVRDSVRAKLRVMVKTLLRRYK YPPDKQDEAVEIVLRQAETLTNTWAGAEQLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 56 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 45 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 45 |
