Gene Information

Name : R2APBS1_3324 (R2APBS1_3324)
Accession : YP_007591623.1
Strain : Rhodanobacter sp. 2APBS1
Genome accession: NC_020541
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3511465 - 3512151 bp
Length : 687 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGTCCACGCTGATCGAGATCAAGGACCTTGCCAAGACCTACGAGCGCGGCAAGCAGAAAGTCGAAGTGCTGCACCACGT
CAACCTGGACATTGCCGAAGGCGATTTCCTGGCGCTGATGGGGCCGTCCGGTTCGGGCAAGACCACCTTGCTCAACCTGA
TCGGCGGGCTCGATGCGCCGAGCGCCGGCAGCATCAGCGTGGGCGGTCAGCGCATCGATCAGTTGGGCGGCGGCGCGCTG
GCGAAGTGGCGCGCGTCGAACGTCGGCTTCGTGTTCCAGTTCTACAACCTGATGCCGATGCTGTCGGCGCAGCGCAACGT
GGAGCTGCCGCTGCTGCTGACGAAGCTGTCCGGTGCGCAGCGCCGGAAGAACGCCGCAATCGCGTTGCAGTTGGTGGGAC
TGTCCGATCGTGCCGGCCACAAGCCGAGCGAATTGTCCGGTGGCCAGCAGCAGCGCGTGGCGATCGCCCGAGCGATCGTC
TCCGATCCCGCCCTGCTGGTCTGCGACGAGCCCACCGGCGACCTCGACCGCCAGAGCGCCGAGGACGTGCTCGGTCTGCT
GCAGCAGCTCAACCGCGAGCACGGCAAGACCATCGTGATGGTCACCCACGACCCGAAGGCCGCCGAGTACGCCAGCCATA
CGCTGCATCTGGACAAGGGCACGCTCGTCGAACAAGCCACGGCATGA

Protein sequence : 
MSTLIEIKDLAKTYERGKQKVEVLHHVNLDIAEGDFLALMGPSGSGKTTLLNLIGGLDAPSAGSISVGGQRIDQLGGGAL
AKWRASNVGFVFQFYNLMPMLSAQRNVELPLLLTKLSGAQRRKNAAIALQLVGLSDRAGHKPSELSGGQQQRVAIARAIV
SDPALLVCDEPTGDLDRQSAEDVLGLLQQLNREHGKTIVMVTHDPKAAEYASHTLHLDKGTLVEQATA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-33 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R2APBS1_3324 YP_007591623.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 6e-51 48
R2APBS1_3324 YP_007591623.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 1e-41 45
R2APBS1_3324 YP_007591623.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 3e-42 41