Gene Information

Name : R2APBS1_3317 (R2APBS1_3317)
Accession : YP_007591616.1
Strain : Rhodanobacter sp. 2APBS1
Genome accession: NC_020541
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3504327 - 3505595 bp
Length : 1269 bp
Strand : +
Note : PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase

DNA sequence :
TTGAACGAACCCAGAATTGCCATCATCGGGCTCGGCTACGTCGGGCTGCCGCTTGCCGTGGCGTTCGGCCGACTGCTCGA
CACCGTCGGCTTCGACACCAGCGTCGGCCGGGTCGACGAGCTGTGCCGGGGCCGCGATCACACGCTCGAAACCTCGGCCG
AAGAGCTCGCCGCCGCGGACCGGCTCCGCTTCACCACCGACGTGCAGGACATCGCGCCGTGCAACGTCTTCATCGTCACC
GTGCCGACTCCGGTCGACGAGGCAAACCGGCCGGACATGCGCCCGCTGGAAAGCGCCAGCGCCAGCATCGGCAGCGTGCT
CAAGCGTGGCGACGTGGTGATCTACGAATCCACCGTCTACCCCGGTACCACCGAGGAGATCTGCGTGCCGGTGCTGGAGC
GGGCTTCCGGGCTGCGCTTCAACCACGATTTCACCTGCGGCTACAGCCCGGAGCGGATCAACCCCGGCGACAAGCTGCAC
CGGCTGCCCACGATCATGAAGATCACCTCCGGCTCCACCGCGGAGACCGCCGACTTCGTCGACGCGCTGTACCGGCGCAT
CATCACCGCCGGCACGCACCAGGCGTCCAGCATCAAGGTGGCCGAGGCGGCCAAGGTGATCGAGAACACCCAGCGCGACG
TCAACATCGCGCTGGTGAACGAGCTGGCGATGATCTTCAACACCATGGGCATCGACACCCAGGACGTGCTGGACGCCGCC
GGCACCAAATGGAACTTCCTGCCGTTCAAGCCCGGCCTGGTCGGCGGCCACTGCATCGGGGTGGACCCGTACTACCTCAC
CCACAAGGCCACCATCCTCGGCTACAACGCCGAACTGATCCTCACCGCGCGCCGCATCAACAGCCGCATGGGCCTGCACG
TGGCGCACCGGGTGATGCGGCTGATGGCGAACAAGCGCATCCACGTGGTCGACTCGCGCATCCTGGTGCTGGGCCTGACC
TTCAAGGAGAACTGCCCGGACCTGCGCAATACCCGCGTGGTGGAAATCGTGCGCGAACTCGAAACCGCGCATGCCCGGGT
GGACGTGTACGACCCCTGGGCCGATCCCGCCGAGGCGGAGGAAAAGCTCGGCATCCGCCCGATCGATGCCCCCGCTGCCG
GCAGTTACGACGCCATCGTGCTGGCCGTGGCGCACCAGGCCTTCCTCGACCTGGGCAGCGAGGGCATCCGCCGCTTCGGC
CGCGAGCACTGCGCACTGTTCGACATCAAGAGCCTGTTGCCGGCCACCACGGTCGACGGCCGGCTCTAG

Protein sequence :
MNEPRIAIIGLGYVGLPLAVAFGRLLDTVGFDTSVGRVDELCRGRDHTLETSAEELAAADRLRFTTDVQDIAPCNVFIVT
VPTPVDEANRPDMRPLESASASIGSVLKRGDVVIYESTVYPGTTEEICVPVLERASGLRFNHDFTCGYSPERINPGDKLH
RLPTIMKITSGSTAETADFVDALYRRIITAGTHQASSIKVAEAAKVIENTQRDVNIALVNELAMIFNTMGIDTQDVLDAA
GTKWNFLPFKPGLVGGHCIGVDPYYLTHKATILGYNAELILTARRINSRMGLHVAHRVMRLMANKRIHVVDSRILVLGLT
FKENCPDLRNTRVVEIVRELETAHARVDVYDPWADPAEAEEKLGIRPIDAPAAGSYDAIVLAVAHQAFLDLGSEGIRRFG
REHCALFDIKSLLPATTVDGRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 5e-121 59
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 5e-121 59
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-91 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R2APBS1_3317 YP_007591616.1 nucleotide sugar dehydrogenase VFG0431 Protein 2e-121 59