Gene Information

Name : R2APBS1_2994 (R2APBS1_2994)
Accession : YP_007591304.1
Strain : Rhodanobacter sp. 2APBS1
Genome accession: NC_020541
Putative virulence/resistance : Virulence
Product : flagellar protein export ATPase FliI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3122706 - 3124073 bp
Length : 1368 bp
Strand : -
Note : PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI

DNA sequence :
ATGAACACCGAGGCGCTCATTGCCGCGCGGCAGGCTAACTGGCAACGCCAGTTCGCGCGGCAGGGCGCGCGCGCGCAGGC
GACGCGCACGCTGGTGGTGGAAGGCAGCCTGCGCCGGGTGGTCGGCTTGACCCTGGAGGCGGAGGGCTGCGAGGCCGCGC
TCGGCGCGCGTTGCCTGGTCGACACCGCCGACGGCGCCACGCTGGAGACCGAGGTGGTCGGCTTCGCCGATGAACGCCTG
CTGCTGATGCCGGTGGGCGACATGCACGGCGTGCTGCCGAACGCGCGGGTGCGCCCGTATGCGCGCAGCGGCGGCCTGCC
GGTCGGCATGGGCCTGCTCGGCCGGGTGATTGGCGCCGACGGCGTGCCGCTGGACGGACTCGGCGCGCTGGAAGCGGACG
AACACGCCGCGCTCAAGCGCGAGCCGATCAACCCGATGGCGCGCAAGCCAATCGACGCGCCGCTGGACGTCGGCGTGCGC
GCGATCAACGCGCTGCTCACCGTCGGCCGCGGCCAACGGCTGGGCCTGTTCGCCGGTTCCGGCGTGGGCAAATCGACCCT
GCTCGGCATGATGACCCGCTACACCAACGCCGACGTGGTGGTGGTCGGGCTGATCGGCGAACGCGGCCGCGAGGTGAAGG
AATTCGTCGAGCACACGCTGGGCGAAGAAGGGCGGCGGCGCGCGGTGATCGTCGCCGCGCCGGCCGACGCGCCGCCGCTC
AAGCGCCTGCGCGGCGCCCAGTACGCCACCGCCATCGCCGAATGGTTCCGCGACCGCGGCCAGCGCGTGCTGCTGCTGAT
GGATTCGCTGACCCGCTACGCCCAGGCGCAGCGCGAGATCGCGCTGGCGATCGGCGAGCCGCCGGCGACCAAGGGTTACC
CGCCGTCGGTGTTCGCCATGATGCCGGCGCTGGTCGAGCGCGCCGGCAACGACGCCGACGGCCGCGGTTCGATCACCGCG
TTCTACACCGTGCTGACCGAGGGCGACGACTACCGCCACGACCCGATCGCCGACGCCGCGCGCGCGATTCTGGACGGCCA
TATCGTGCTGTCGCGCGACCTGGCCGAAGCCGGCCACTACCCGGCGATCGACATCGAGGCGTCGATCAGCCGCGTGATGC
CGGCGGTGGTGGCGCGCGAACACCTGCGTGCGGCGCAGTGCTTCCGCCAGGTCTATTCCGCCTACCGCCAGCAGCGCGAC
CTGATCGCGGTGGGCGCCTACCAGAAAGGCTCCGACCCGCAGGTCGACCAGGCGATCGAGCTGTGGCCGCAGCTGCGCGC
CTTCCTGCAGCAGGAAGTCGACGAACCGATGACGCTCGAGGCGGCGGTCGGGAAACTCGACGCCCTCGCCCAGCAGGTGG
CCGCATGA

Protein sequence :
MNTEALIAARQANWQRQFARQGARAQATRTLVVEGSLRRVVGLTLEAEGCEAALGARCLVDTADGATLETEVVGFADERL
LLMPVGDMHGVLPNARVRPYARSGGLPVGMGLLGRVIGADGVPLDGLGALEADEHAALKREPINPMARKPIDAPLDVGVR
AINALLTVGRGQRLGLFAGSGVGKSTLLGMMTRYTNADVVVVGLIGERGREVKEFVEHTLGEEGRRRAVIVAAPADAPPL
KRLRGAQYATAIAEWFRDRGQRVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAMMPALVERAGNDADGRGSITA
FYTVLTEGDDYRHDPIADAARAILDGHIVLSRDLAEAGHYPAIDIEASISRVMPAVVAREHLRAAQCFRQVYSAYRQQRD
LIAVGAYQKGSDPQVDQAIELWPQLRAFLQQEVDEPMTLEAAVGKLDALAQQVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-68 50
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-70 50
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-70 50
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-70 50
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-70 50
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-70 50
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 1e-77 50
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 8e-73 49
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-75 49
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 6e-80 49
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-80 49
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-79 49
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-80 49
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-80 49
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 5e-79 49
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 6e-80 49
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 5e-72 48
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 8e-72 48
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-72 48
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-76 48
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-76 48
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 2e-70 47
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 2e-70 47
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 5e-71 47
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 4e-70 47
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 6e-75 47
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-70 47
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-69 46
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 1e-69 46
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-69 46
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-69 46
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-69 46
escN AAK26715.1 EscN Virulence LEE Protein 7e-69 46
escN AAL57542.1 EscN Virulence LEE Protein 7e-69 46
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-69 46
escN AAC38383.1 EscN Virulence LEE Protein 3e-69 46
unnamed AAL06369.1 EscN Virulence LEE Protein 3e-68 46
escN AAC31513.1 L0034 Virulence LEE Protein 3e-69 46
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-69 46
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-69 46
escN NP_290268.1 hypothetical protein Virulence LEE Protein 4e-69 46
ECs4568 NP_312595.1 EscN Virulence LEE Protein 4e-69 46
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 9e-65 44
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 9e-61 43
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-56 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 2e-56 42
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-56 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-56 42
invC AAS66861.1 InvC Not tested SSR-2 Protein 5e-52 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG1254 Protein 6e-116 65
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG2499 Protein 2e-110 64
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG2331 Protein 5e-108 63
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG0048 Protein 4e-83 52
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG0390 Protein 2e-78 50
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG0192 Protein 1e-77 50
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG0515 Protein 6e-71 50
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG2144 Protein 1e-77 49
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG0730 Protein 2e-69 46
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG0812 Protein 2e-69 46
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG1008 Protein 9e-58 44
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG2459 Protein 3e-60 42
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG0555 Protein 1e-56 42
R2APBS1_2994 YP_007591304.1 flagellar protein export ATPase FliI VFG1778 Protein 3e-60 41