Gene Information

Name : R2APBS1_2621 (R2APBS1_2621)
Accession : YP_007590939.1
Strain : Rhodanobacter sp. 2APBS1
Genome accession: NC_020541
Putative virulence/resistance : Virulence
Product : DNA repair protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2781129 - 2781614 bp
Length : 486 bp
Strand : +
Note : PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc

DNA sequence : 
ATGCCAAAGGTTCCACCCTCGGCACCGCCGTCAGCCGATCATTCTCACAACGCTACAGATCAAGCCATCCTGGCTGCCGC
GGAGGGCATCCTGCACGAGAAACTTCAGCGGCAAGGTTGCATCGGCAACCCGATGGATGCCGCCGACTTCCTGCGCATGC
GCATGGGAGCGCTACCCCACGAGGAGTTCCATGTCCTGTGGCTCGATAACCGGCATCGCATCCTGGACTGTCAGCGGCTT
TTCACCGGCACCGTCGATGGTGCCAGCGTCTATCCGCGTGAGGTCGTGCGAGCCGCCTTGGGCATCAATGCCAGCGCGGC
CATCTTCGCCCACAACCATCCAAGCGGCGTAGCCGAACCCAGTGCGGCTGACCGCGCCATTACCAAGGAGCTACGCGATG
CCCTAAGCCTGGTCGGTGTGAGGGTGCTCGATCACCTCGTTGTCGGTGCCGAGTGCGTCAGCATGGCCGGCCGGGGGCTT
CTGTAG

Protein sequence : 
MPKVPPSAPPSADHSHNATDQAILAAAEGILHEKLQRQGCIGNPMDAADFLRMRMGALPHEEFHVLWLDNRHRILDCQRL
FTGTVDGASVYPREVVRAALGINASAAIFAHNHPSGVAEPSAADRAITKELRDALSLVGVRVLDHLVVGAECVSMAGRGL
L

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 8e-33 52
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 8e-33 52
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-33 52
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 2e-30 51
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-19 49
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-19 49
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 5e-19 47
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 6e-20 46
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 2e-26 44
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 5e-20 43
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 7e-20 43
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 5e-20 43
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 5e-20 43
unnamed AAL08475.1 unknown Not tested SRL Protein 4e-20 43
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 7e-20 43
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 9e-20 42
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 4e-20 42
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 5e-20 42
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 2e-20 42
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-20 42
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-20 42
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 6e-20 42
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 4e-20 42
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 5e-20 41
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 1e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
R2APBS1_2621 YP_007590939.1 DNA repair protein VFG1119 Protein 2e-33 52
R2APBS1_2621 YP_007590939.1 DNA repair protein VFG0660 Protein 4e-20 49
R2APBS1_2621 YP_007590939.1 DNA repair protein VFG1617 Protein 2e-20 46
R2APBS1_2621 YP_007590939.1 DNA repair protein VFG1528 Protein 2e-20 43
R2APBS1_2621 YP_007590939.1 DNA repair protein VFG1066 Protein 2e-20 43
R2APBS1_2621 YP_007590939.1 DNA repair protein VFG1678 Protein 2e-20 42