Gene Information

Name : YM304_05570 (YM304_05570)
Accession : YP_007562809.1
Strain : Ilumatobacter coccineum YM16-304
Genome accession: NC_020520
Putative virulence/resistance : Virulence
Product : putative OmpR family two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 623109 - 623798 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence :
ATGAGCGATCGGCCCCCGAAGATCCTCGTCGTCGACGACGAAGAGAACATCCGGTTCCTCGTCGAGTCGGCGCTCCAACT
CGCGGGCATGGAAACCGAGGGGGCCGACGACGGCCGAGCGGCACTGAAGGCGGCCGCCGACGCTCGCCCCGACCTCATCG
TGCTCGACGTGATGATGCCCGAACTCGACGGTTTCGAGGTGCTGCAACGTCTCCGCGACAGTGGCGTGCGAACACCGGTG
ATCTTCTTGACCGCACGCGACTCGACCGACGACCGGGTGCGCGGCCTCACCACCGGGGGCGACGACTACATGGTCAAGCC
GTTCGCAGTGGCCGAACTCGTGGCGCGTGTGCAGCTCCGCCTCCAGCAAACCGGGCGCGCCTCGAGCCAGACGGTGCTGC
GCTGTGCCGACCTCGAACTCGACGTCGAGGCGCACCGAGTCAGCCGCGGCGGCACCGTCGTCGAGCTGTCGCCGACCGAG
TACAAGTTGCTGCACCACCTCCTCGCCAACAGCGGTCGCGTGCTCACCCGCGCGCAACTGCTCGACCACGTGTGGGATTA
CGACTTCGGCGGCGACTCGTCGGTGGTCGACACCTACATCAGCTATCTGCGACGCAAACTCGACCACGTCGAACCCAAGC
TGATCCACACGATTCGCGGCGTCGGGTTCTGCCTGCGAGCCGACGAGTGA

Protein sequence :
MSDRPPKILVVDDEENIRFLVESALQLAGMETEGADDGRAALKAAADARPDLIVLDVMMPELDGFEVLQRLRDSGVRTPV
IFLTARDSTDDRVRGLTTGGDDYMVKPFAVAELVARVQLRLQQTGRASSQTVLRCADLELDVEAHRVSRGGTVVELSPTE
YKLLHHLLANSGRVLTRAQLLDHVWDYDFGGDSSVVDTYISYLRRKLDHVEPKLIHTIRGVGFCLRADE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator BAC0197 Protein 7e-38 48
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator BAC0638 Protein 2e-33 45
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator BAC0125 Protein 2e-34 44
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator BAC0083 Protein 9e-39 44
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator HE999704.1.gene1528. Protein 6e-33 43
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator BAC0308 Protein 1e-33 43
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator HE999704.1.gene2815. Protein 7e-32 42
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_002952.2859905.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_002758.1121668.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_009641.5332272.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_013450.8614421.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_007793.3914279.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_007622.3794472.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_003923.1003749.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_002745.1124361.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_009782.5559369.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator NC_002951.3237708.p0 Protein 6e-29 41
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator AE000516.2.gene3505. Protein 1e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator VFG1386 Protein 2e-50 51
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator VFG1389 Protein 4e-39 49
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator VFG1390 Protein 3e-40 47
YM304_05570 YP_007562809.1 putative OmpR family two-component response regulator VFG0596 Protein 4e-31 43