Gene Information

Name : YM304_41330 (YM304_41330)
Accession : YP_007566385.1
Strain : Ilumatobacter coccineum YM16-304
Genome accession: NC_020520
Putative virulence/resistance : Virulence
Product : iron siderophore ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4679872 - 4680717 bp
Length : 846 bp
Strand : +
Note : -

DNA sequence : 
ATGACCGACCCGACCCCGGCACGACTCAGCGCCAACGGCGTCTCGCTGTCGTACGACGACCACCTCGTCGTCGATCGCCT
CGACCTCGACATCCCCGACGGCAAGGTCACCACGATCATCGGCCCCAACGCCTGCGGCAAGTCGACGCTGCTGCGAGCGC
TCGCCCGCCTGCTCAAGCCATCGACCGGCCAGGTCGTGCTCGACGGCGAACTGATCCACAAGCTCCCGACCAAGGAGGTG
GCCCGCCGCCTCGGACTGCTGCCGCAGACCCCGATCGCTCCGGAGGGCATCACGGTCGTCGACCTCGTCGCGCGTGGCCG
GACCCCGCACCAGCGGTTGTTCCACCAGTGGTCGCAGGCCGACGAAGCAGCGGTTCGTACTGCGCTCGACGCCACCTCGA
CCGCCGACCTCGCCGACCGGTCGATCGACGAACTGTCGGGCGGCCAGCGTCAGCGCGTGTGGATCGCCATGGCGCTCGCG
CAGGAGACCGAGTTGCTCCTCCTCGACGAGCCGACGACGTTCCTCGACATCGCACACCAGATCGACGTGCTCGACCTCGT
CGAGAAGCTGAACACCGAACGCGGACGAACCGTCGTCGTCGTGCTCCACGACCTCAACCTCGCGTGCCGCTACGCCGACC
ACATCGTCGCCATGCGCGACGGCGCCATCGTCGCGGCAGGTCGCCCGGCCGACGTGATCAACGCCGACACCGTGCGCGCC
GTGTTCGGGCTCGAGTCGGTCGTGATCGACGACCCGATCAGTGGCACACCACTCGTCGTGCCGATCAGCTCCAACTCCAC
GAAGGCCAACCGATCACCAGCGTTGTCAGATGGTTCATCGCTCTGA

Protein sequence : 
MTDPTPARLSANGVSLSYDDHLVVDRLDLDIPDGKVTTIIGPNACGKSTLLRALARLLKPSTGQVVLDGELIHKLPTKEV
ARRLGLLPQTPIAPEGITVVDLVARGRTPHQRLFHQWSQADEAAVRTALDATSTADLADRSIDELSGGQRQRVWIAMALA
QETELLLLDEPTTFLDIAHQIDVLDLVEKLNTERGRTVVVVLHDLNLACRYADHIVAMRDGAIVAAGRPADVINADTVRA
VFGLESVVIDDPISGTPLVVPISSNSTKANRSPALSDGSSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-58 56
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-49 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-49 52
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-49 52
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-49 52
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-42 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-49 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-49 48
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-40 47
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-42 43
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-42 43
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-42 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-42 43
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 3e-27 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YM304_41330 YP_007566385.1 iron siderophore ABC transporter ATP-binding protein BAC0164 Protein 6e-43 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YM304_41330 YP_007566385.1 iron siderophore ABC transporter ATP-binding protein VFG0925 Protein 1e-62 55
YM304_41330 YP_007566385.1 iron siderophore ABC transporter ATP-binding protein VFG1042 Protein 6e-43 48