Gene Information

Name : copB (YM304_31910)
Accession : YP_007565443.1
Strain : Ilumatobacter coccineum YM16-304
Genome accession: NC_020520
Putative virulence/resistance : Resistance
Product : copper-transporting ATPase CopB
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.4
Position : 3559981 - 3561927 bp
Length : 1947 bp
Strand : +
Note : -

DNA sequence : 
ATGTTCAGAGTTGCGTTCTGGCGCAACCTCGCTCTCGCGATTCCGGTCCTGATCTTCTCCGAGCAGATCCAGGACTGGTT
CGGCTACGAGCTCTCGTTCTCCGGCTCGCACTGGATCGCGCCCGTACTCGGCACCATCATCTACGTCTACGGTGGCCGTC
CGTTTCTCACCGGCGGCCTCGACGAGGCCAGGTCTCGCCAGCCGGGGATGATGCTGTTGATCGCCTTGGCGATCACCGTG
GCGTTCGCCTCGTCGGTCGCGTCACTCACCGATGCGATCGACCTCGAGTTCTGGTGGGAACTCGCCTCGCTCATCGTCAT
CATGCTGCTCGGCCACTGGCAGGAGATGAAGGCGATCGGACAAGCGCAGGGGGCCCTCGCCGCGCTCGCCGAACTCCTGC
CCGACGACGCCGAGCGGGTGACGGAGAACGGCGACATCGAGAGCGTGGCGATCGGCGACCTCGTCGTGGGCGATCGGTTG
CTGATTCGTTCCGGAAGTCGGATTCCCGCGGATGGCCTGATCGTCGATGGCGCTGTCGAAGTCGACGAGTCGATGTTGAC
CGGCGAGTCGAATCCGGTGGCGAAGTCCGAGGGCGACCAGGTGGTCGCCGGATCTGTTGCCACCGACAACTCCATTCGCG
TCGAGGTCACGGCGATCGGGGACGACACAGCTCTGGGCGGGATTCAACGACTCGTCACCGAGGCACAAGGTTCGAAGTCA
CGAGCGCAGGCACTCGCCGACCGCGCCGCCGCCGTACTCTTCTACGTCGCCCTCGGGGCGGCCACCATCACCGCGATCGT
CTGGTTGGCGCTCGGCCGCACCGACGACGCGCTGATCCGGACGATCACGGTCCTGATCATCGCGTGCCCACACGCCCTCG
GCCTCGCCATTCCTCTCGTGATCTCGCTGTCGACGGCCAAGGCCGCCGAGAACGGCATCCTGGTCAAGGATCGCCTCGCC
TTGGAACGCATGCACACGATCGACACCGTCCTGTTCGACAAGACGGGCACGCTCACGGCCGGCGAGCACGTGGTCGCCGA
CGTCGCAGCGATCGATGGCGACGCCGACCGCATCCTCTCCATCGCCGCCGGGGTCGAGGGCGACTCCGAGCACCCGCTCG
CGCGTGCCATCGTCCGCAAGGCGGCACGTTCCGGCATCGACGCAGCAGACGCCATCGACTTCCGCTCGATGACGGGGCGT
GGCGTGGCTGCGACGGTCGACGGGAAGTCGGTGTCGATCGGCGGCCCGTCGCTGCTTCGCGAACTCGAGCTGACGACGCC
GCGAGAACTGAGCGAGCAGATCGACGAGTGGGAGCATCGTGGCGCGGCGGTGTTGCACGTCATCGTCGACGACGCGATCG
TCGGAGCGCTTGCGCTCGAGGACGGCGTACGGTCCGAGTCCCGCCTGGCCGTCGATGCGCTCCACGATCGCGGCATTCGT
GTCGTCATGCTGACGGGCGACTCTCAGGCCGTTGCCGACAGCGTTGCTGCTGAACTCGGCATCGACGAGGTGTACGCCGA
GGTGCTTCCCGACGAGAAGGACGCCGCCGTCCGAGACCTCCAGGATCGGGGCCTGACCGTCGCGATGGTCGGCGACGGCG
TCAACGACGCGCCGGCCCTCGCTCGTGCCGACGTCGGCTTGGCCATCGGGGCGGGAACCGACGTGGCGATCGAATCGGCG
GGTGTCGTGCTCGCCTCGTCGGACCCGCGCTCCGTGCTCGGCGTGATCGTCCTGTCGAACGCGAGCTATCGAAAGATGAT
CCAGAACCTCGCGTGGGCAGCCGGGTACAACATCGCGGCCATTCCGCTCGCGGCAGGCGTCCTCGCTCCGATCGGCTTCG
TGCTCCCGCCCGCAATCGGCGCGGCGCTCATGAGCCTCTCCACGATCGTCGTCGCGGCCAACGCCCAACTGCTGCGCCGA
GTCGACGTTCGACCCGACGCTCACTGA

Protein sequence : 
MFRVAFWRNLALAIPVLIFSEQIQDWFGYELSFSGSHWIAPVLGTIIYVYGGRPFLTGGLDEARSRQPGMMLLIALAITV
AFASSVASLTDAIDLEFWWELASLIVIMLLGHWQEMKAIGQAQGALAALAELLPDDAERVTENGDIESVAIGDLVVGDRL
LIRSGSRIPADGLIVDGAVEVDESMLTGESNPVAKSEGDQVVAGSVATDNSIRVEVTAIGDDTALGGIQRLVTEAQGSKS
RAQALADRAAAVLFYVALGAATITAIVWLALGRTDDALIRTITVLIIACPHALGLAIPLVISLSTAKAAENGILVKDRLA
LERMHTIDTVLFDKTGTLTAGEHVVADVAAIDGDADRILSIAAGVEGDSEHPLARAIVRKAARSGIDAADAIDFRSMTGR
GVAATVDGKSVSIGGPSLLRELELTTPRELSEQIDEWEHRGAAVLHVIVDDAIVGALALEDGVRSESRLAVDALHDRGIR
VVMLTGDSQAVADSVAAELGIDEVYAEVLPDEKDAAVRDLQDRGLTVAMVGDGVNDAPALARADVGLAIGAGTDVAIESA
GVVLASSDPRSVLGVIVLSNASYRKMIQNLAWAAGYNIAAIPLAAGVLAPIGFVLPPAIGAALMSLSTIVVAANAQLLRR
VDVRPDAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 7e-85 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copB YP_007565443.1 copper-transporting ATPase CopB BAC0629 Protein 8e-122 48
copB YP_007565443.1 copper-transporting ATPase CopB BAC0079 Protein 8e-123 46
copB YP_007565443.1 copper-transporting ATPase CopB BAC0383 Protein 2e-100 43
copB YP_007565443.1 copper-transporting ATPase CopB BAC0101 Protein 4e-73 43
copB YP_007565443.1 copper-transporting ATPase CopB BAC0183 Protein 1e-72 42
copB YP_007565443.1 copper-transporting ATPase CopB BAC0568 Protein 2e-71 41