Gene Information

Name : YM304_19260 (YM304_19260)
Accession : YP_007564178.1
Strain : Ilumatobacter coccineum YM16-304
Genome accession: NC_020520
Putative virulence/resistance : Virulence
Product : putative OmpR family two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2138381 - 2139061 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence :
GTGGGTACACGAATCCTTGCGGTCGAAGACGACGAGCGAATCCGATCCGCGGTCAAGCTCGCCCTCGAAGACGAAGGGTG
GATCGTCGATGAAGCCGAGAGTGGCGAAGAAGCCATCGACCTCTTTCAGCGGTCGTCACCCGACGTCGTCCTGATCGACA
TCATGCTGCCGGGCATCGACGGATTCGAACTGTGCCGCACACTGCGCCGCACCAGCGACGTCCCGGTCGTCATGGTCACC
GCCCGCAACGACACGCACGACGTGGTCGCCGGGCTCGAAGCGGGCGCCGACGACTACCTCACCAAGCCGTTCGCTCCCAA
GGAGTTGTCGGCCCGTATCCGTGCGCTGCTGCGTCGTATCCGCCCCGGTGCTCCTGGTCATGCTCGGCTCGTGTTCGGTG
ACCTCGAACTCATCCCCGACGAAGGCAAGGTGCTGCGCGAAGGCGCCGAGGTGCACCTCACCAAGACCGAGTTCCGCCTG
CTCTGCGAACTCGCCGAGAGCCCCGGCAAGGTGCTCAGCCGTGAAGCGCTGCTCGACAAGGTGTGGGGCTACGACTACTT
CGGCGACGGTCGGCTCGTCGACGTGCACATCCGCCGACTGCGCACCAAGGTCGAAAGCGATCCTGCCAACCCGCGCCACG
TCGTCACGGTGCGCGGCCTCGGCTATCGCCTCCAGACCTGA

Protein sequence :
MGTRILAVEDDERIRSAVKLALEDEGWIVDEAESGEEAIDLFQRSSPDVVLIDIMLPGIDGFELCRTLRRTSDVPVVMVT
ARNDTHDVVAGLEAGADDYLTKPFAPKELSARIRALLRRIRPGAPGHARLVFGDLELIPDEGKVLREGAEVHLTKTEFRL
LCELAESPGKVLSREALLDKVWGYDYFGDGRLVDVHIRRLRTKVESDPANPRHVVTVRGLGYRLQT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator AE000516.2.gene3505. Protein 1e-42 48
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_012469.1.7685629. Protein 5e-44 47
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator CP000034.1.gene3671. Protein 6e-34 42
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_012469.1.7686381. Protein 2e-36 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_002952.2859905.p0 Protein 4e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_002758.1121668.p0 Protein 5e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_009641.5332272.p0 Protein 5e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_013450.8614421.p0 Protein 5e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_007793.3914279.p0 Protein 5e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_007622.3794472.p0 Protein 5e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_003923.1003749.p0 Protein 4e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_002745.1124361.p0 Protein 5e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_009782.5559369.p0 Protein 5e-38 41
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator NC_002951.3237708.p0 Protein 5e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator VFG1390 Protein 4e-35 45
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator VFG1389 Protein 5e-25 42
YM304_19260 YP_007564178.1 putative OmpR family two-component response regulator VFG1702 Protein 7e-29 41