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Name : clpC (Bbr_1356) Accession : YP_007555154.1 Strain : Bifidobacterium breve UCC2003 Genome accession: NC_020517 Putative virulence/resistance : Virulence Product : Negative regulator of genetic competence clpC/mecB Function : - COG functional category : - COG ID : - EC number : - Position : 1689996 - 1692605 bp Length : 2610 bp Strand : - Note : - DNA sequence : ATGTTCGAACGGTTTACCGACCGTGCACGGCGCGTGATCGTGTTGGCGCAGGAAGAGGCGAGGACTCTCCAGCACAACTA CATCGGCACCGAACACCTGCTGCTCGGCCTGATCCGAGAGGGTGAGGGCGTGGCCGCCAAGGCACTCGCCTCGAAGGGCG TGGAGTTGGACGCCACCCGCAAGCAGGTCGAAGAGATGATCGGCAAGGGCAACGCGGCCCCGAACGGGCACATCCCCTTT ACCCCGCATGCCAAGCAGGTGCTGGAGTTCTCGTTGCGTGAGGCTTTGCAGTTGGGCCACAGCTACATCGGCACTGAGCA TATTCTGCTCGGCTTGATTCGCGAGGGTGAAGGCGTGGGCACTCAGGTGCTCATTAAGATGGACGTTGATTTGGGCGAGC TGCGCAGCGCAACCATCGATATGATTCGCGGCAACTCCGGCACCTCCACTGACGGCAAGGGCGATTTGGCCAACGCCGGT GGCGTGGCGGACAAGCAGAACAAGTCCGGTTCCGCCATTCTCGACCAGTTCGGCCGCAACCTGACCGCCGAAGCCGCCGA AGGCAAGTTGGATCCGGTCATCGGCCGTACTAATGAGATCGAGCGCGTTATGGTCGTGCTCTCCCGCCGCACCAAGAACA ACCCGGTGCTGATCGGCGAGCCAGGTGTGGGCAAGACCGCTGTGGTCGAAGGACTGGCCCAGAAGATTCAGGCCGGCGAT GTGCCGGAGACCTTGAAAGGCAAGCAGGTCTACTCGCTGGATCTTGGTTCCATGGTGGCCGGTTCCCGTTACCGTGGTGA TTTCGAGGAGCGTCTGAAGAAGGTCCTGAAGGAAATCAAGACCCGCGGCGACATCGTGCTGTTCATCGACGAGATCCACA CCATCGTGGGGGCTGGCTCTGCCGACGGCGCACTGGGTGCCTCCGATATGTTGAAGCCGATGCTGGCCCGTGGCGAGCTG CAGACCATCGGCGCCACCACCACCGACGAGTACCGCAAGTACATCGAGAAGGACGCGGCGCTGGAACGCCGATTCCAGCC CATCCAGGTGCATGAGCCGACCATCGCCGAGACCATTGAAATCTTGAAGGGCCTGCGTTCTCGCTACGAGAACCACCATC ACGTGACCATCACCGATGGTGCGTTGCAGTCTGCCGCAGAGCTTTCCAGCCGCTATATTCAGGATCGCAACCTGCCGGAT AAGGCCATCGATTTGATCGACGAGGCCGGTGCCCGCCTGCGCATCAAGCGTCTGACCGCACCGCCCGAGCTCAAGGAGCT TGACGACAAGATCGCCAAGATCGCCGCCGACAAGGACGAGGCCATCAAGGGCCAGGACTTCGAGAAGGCCGCCGAACTGC GCGACAACCAAGAGAAGTTGGAAGCCGAGCGCAAGGCGAAGGAAGATTCCTGGCGCGAAGGCGAGTCCGACGTCAAGATG GTCGTGGATGAGGACGTGATCGCCGAGGTCATCAGCGCCACCACCGGTATTCCGGTGTTCAAGCTGACCCAGGCTGAGTC CAAGAAGCTGCTCAACATGGAAGCCGAGCTGCACAAGCGCATTATCGGCCAGGATGAGGCGGTGTCCGCCCTGTCCCGCT CCATCCGCCGTACCCGCGTGGGCCTGAAGGACCCGAAGCGCCCGTCCGGTTCGTTCATCTTTGCCGGCCCCACCGGCGTG GGCAAGACCGAGCTGGCCAAGACGCTGGCCGAGTTCCTGTTCGACGATGAGGATGCGCTGATTCGCGTCGATATGTCCGA GTTCTCCGAGAAGTATGCGGCATCGCGTCTCTTTGGTGCGCCTCCGGGATACGTCGGTTATGAGGAGGGCGGCGAGCTCA CCGAGAAGGTGCGCCGCAAGCCGTTCTCCGTGGTGCTGTTCGACGAGATCGAGAAGGCGCATCCGGATATCTTCAACACG CTGCTGCAGGTGCTGGATGACGGCCATCTGACCGACGGTCAGGGCCGCAAAGTGGACTTCAAGAACACCATCATCATCCT GACCACCAACTTGGGCACCCGCGACATTGCCAAAGCCGCCAACACCGGCTTCAACCTCGGCGCGAACACCGAGTCGAGCT ATCAGCGCATGAAGGATCAGGTGAGTTCGGAGCTGAAGCAGCAGTTCCGTCCCGAGTTCCTCAACCGTTTGGACGACATC ATCGTTTTCAAGCAGCTGACTGAGCCGGAGGTGCGTCAGATCGTCGATCTCGATGTCAAGCAGCTCAACGATCGTCTGTT CGACCGCCACATGTCGCTCGAACTTACCGACGCCGCCAAGGATCTGCTCGCGCAGAAGGGCTTTGACCCGCTGCTCGGCG CTCGTCCGCTGCGCCGTGTGATTCAGCGCGACATCGAGGACGCCATCTCCGAGAAGATCCTGATGGGCGACCTCGAAGAC GGCCAGCGCGTGATCGTGGACGCGGAAGGCGAAGGCATTCTCGGCGAATTCACCTTCAAGGGTGAACAGTTCGAGGAGCC GGCCGTCGCCGATAAGCCGTCCGAAGACGGTGTTGACGGTGCTGGCTCTGACGGTGAGGCACCGGCAGAAGCCGCTCCGG CCGCTGAACAGACCGAAGCCTCCGACTCCAACGACACTCCACAGGAGTAA Protein sequence : MFERFTDRARRVIVLAQEEARTLQHNYIGTEHLLLGLIREGEGVAAKALASKGVELDATRKQVEEMIGKGNAAPNGHIPF TPHAKQVLEFSLREALQLGHSYIGTEHILLGLIREGEGVGTQVLIKMDVDLGELRSATIDMIRGNSGTSTDGKGDLANAG GVADKQNKSGSAILDQFGRNLTAEAAEGKLDPVIGRTNEIERVMVVLSRRTKNNPVLIGEPGVGKTAVVEGLAQKIQAGD VPETLKGKQVYSLDLGSMVAGSRYRGDFEERLKKVLKEIKTRGDIVLFIDEIHTIVGAGSADGALGASDMLKPMLARGEL QTIGATTTDEYRKYIEKDAALERRFQPIQVHEPTIAETIEILKGLRSRYENHHHVTITDGALQSAAELSSRYIQDRNLPD KAIDLIDEAGARLRIKRLTAPPELKELDDKIAKIAADKDEAIKGQDFEKAAELRDNQEKLEAERKAKEDSWREGESDVKM VVDEDVIAEVISATTGIPVFKLTQAESKKLLNMEAELHKRIIGQDEAVSALSRSIRRTRVGLKDPKRPSGSFIFAGPTGV GKTELAKTLAEFLFDDEDALIRVDMSEFSEKYAASRLFGAPPGYVGYEEGGELTEKVRRKPFSVVLFDEIEKAHPDIFNT LLQVLDDGHLTDGQGRKVDFKNTIIILTTNLGTRDIAKAANTGFNLGANTESSYQRMKDQVSSELKQQFRPEFLNRLDDI IVFKQLTEPEVRQIVDLDVKQLNDRLFDRHMSLELTDAAKDLLAQKGFDPLLGARPLRRVIQRDIEDAISEKILMGDLED GQRVIVDAEGEGILGEFTFKGEQFEEPAVADKPSEDGVDGAGSDGEAPAEAAPAAEQTEASDSNDTPQE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 65 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_007555154.1 | Negative regulator of genetic competence clpC/mecB | VFG0079 | Protein | 0.0 | 57 |
| clpC | YP_007555154.1 | Negative regulator of genetic competence clpC/mecB | VFG0080 | Protein | 2e-136 | 51 |
