Gene Information

Name : pilR (AZKH_3925)
Accession : YP_007553185.1
Strain : Azoarcus sp. KH32C
Genome accession: NC_020516
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4353922 - 4355301 bp
Length : 1380 bp
Strand : -
Note : -

DNA sequence : 
ATGACGCAACCCGAACGACGCAATCGCCCGAGGGGGATCGATGTACTGGTCGTGGACGACGAAGAAGACATCCGCGAAGT
GCTCGAACTCTCGCTGCTGCGCATGGGGCTCGCCTGCGATACCGCCGGGACCGTTGCCGATGCCCGCCGGCTGCTGGACG
AAAAGCCCTACCGGCTGTGCCTCACCGACATGCGCCTGCCGGATGGCGATGGACTGGAACTGGTTGCCCACATCCAGTCG
CACATTCCCGGGCTTCCTGTGGCCGTGATTACCGCATTCGGCAGCATCGAGACGGCAATCCGCGCCCTCAAGTGTGGCGC
ATTCGATTTCGTGACCAAGCCGGTCGAACTCAAGGCGCTGCGCGAAATCGTCAGTCACGCATTGAACGTGCAGAGCGCGC
CGGGCTTGGGAGAAAACGCCGGCGGCCGCAGTCTGATCGGGCGCTCCGCCGCGCTCGAGCAACTGCGTAGCCAGATATCG
AAGCTCGCGCGCAACCAGGCGCCCGTCTTCATCCTCGGCGAATCCGGTACCGGCAAGGAAGTCATCGCCCGCCTGATTCA
CGAGTCCGGGCCGCGTGCGAATGCCCCCTTCGTTCCGGTCAATTGCGGCGCCATCGCACCTGAACTGATGGAAAGCGAGT
TCTTCGGACATCGCAAGGGGAGCTTCACTGGCGCCGTATCCGACAAGGACGGCCTTTTCCAGGCTGCACGGGGCGGCACG
CTGTTCCTCGACGAAGTCGCCGACCTGCCCTTGGCGATGCAGGTGAAGCTCCTGCGCGCGATTCAGGAGCGAGCGGTACG
ACCCGTTGGCGCCCACGCCGAAGAACCGGTGGATGTCCGCATCCTGTCTGCCTCCCATCGCGACCTCGGGCAATTGGTCG
CCGAAGGCAAGTTTCGTCAGGACCTCTACTTCCGCATCAACGTCATCACCTTGCGTGTGCCGCCGCTACGCGAGCGGCCG
GAGGACATCCCCGAGCTGGCGGAGCACATCCTTGCCCGACTCGCTGAGCGCGAGGGTGGCGCTCCGCGGCGGCTGACCCG
TGAAGCAAGCCAACTGCTGGCACAGCATTCCTTTGCCGGCAACGTTCGCGAGCTGGAAAATTTGCTCGAAAGAGCCTGCG
CGCTGTGTGACGGTGACGAGATCACTGGCCCCGATCTCAGTCTCCATCCGACAGAGGGGCTAGCGCAGCCCTTAGTCTTC
TTCAATGCAAGCGGCGATGTTCATGACGATGTTGCGGAGAGCGATTCGGACAGCGACGAACGCGCGCTGGTGCTGCGCAT
GCTCGATGAGACGCGCTGGAACCGCAGCGAGGCAGCGCGTCGGCTTGGGATGACGCTCAGACAGTTGCGGTACCGGTTGC
AGAAGTGGGGGATGGAGTAG

Protein sequence : 
MTQPERRNRPRGIDVLVVDDEEDIREVLELSLLRMGLACDTAGTVADARRLLDEKPYRLCLTDMRLPDGDGLELVAHIQS
HIPGLPVAVITAFGSIETAIRALKCGAFDFVTKPVELKALREIVSHALNVQSAPGLGENAGGRSLIGRSAALEQLRSQIS
KLARNQAPVFILGESGTGKEVIARLIHESGPRANAPFVPVNCGAIAPELMESEFFGHRKGSFTGAVSDKDGLFQAARGGT
LFLDEVADLPLAMQVKLLRAIQERAVRPVGAHAEEPVDVRILSASHRDLGQLVAEGKFRQDLYFRINVITLRVPPLRERP
EDIPELAEHILARLAEREGGAPRRLTREASQLLAQHSFAGNVRELENLLERACALCDGDEITGPDLSLHPTEGLAQPLVF
FNASGDVHDDVAESDSDSDERALVLRMLDETRWNRSEAARRLGMTLRQLRYRLQKWGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-96 47
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-96 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_007553185.1 two-component response regulator BAC0467 Protein 2e-71 42
pilR YP_007553185.1 two-component response regulator BAC0089 Protein 1e-65 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_007553185.1 two-component response regulator VFG1214 Protein 4e-120 60
pilR YP_007553185.1 two-component response regulator VFG1249 Protein 5e-62 42
pilR YP_007553185.1 two-component response regulator VFG0116 Protein 6e-62 41