Gene Information

Name : capDb (AZKH_3756)
Accession : YP_007553016.1
Strain : Azoarcus sp. KH32C
Genome accession: NC_020516
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4164011 - 4165900 bp
Length : 1890 bp
Strand : -
Note : -

DNA sequence : 
ATGAAGCGCTTGAGCCGTTCCGCTTTCGTCCTCCTGTTTGACTTGGCCGCTGCGTGTACAGCTTGGGTGACGACATACGT
CTTGCGTTTCAATTTTGAGTGGCCTGCTGAGTATGGAGTGCAGATTGCATGGGGCCTGCTCGTGCTTCTTCCGACGCATG
CGGTTGTCTGTAAGCGGGCTGGTCTGTATCGCGGCATATGGGTGTTTGCAAGTCTGCCCGATTTGGCTCGTGTACTTCGT
GCCGTAGCGATTTCATCGCTCGCTGTGTGGGCGTTTGTGGCGGTTTACCGGGCCTCGCCTGGGGTGCCTCGTTCGACACT
CATTCTCTATCCGATGTTGCTCGTCCTGATCATGGCGGGAGGGCGTGCAGCCTACCGTATGTGGAAGGAGCACCGGCTCT
ACGGTGGGTTGATAGCAAAGGGCAAACCGGTGGTTGTGGTGGGGGCCGGGCGCGGTGGGGCGATGCTGCTGCGCGAGCTC
CAGCGCAGCCCGGATTGGCGGGTGGTTGGGCTGGTTGATGACGACTCGGACAAGTGGGGGCGTGAGCTTCTTGGACTGCC
GGTGCTCGGACCGGTAAAGGCGTTACCGCAAATTCTGGTGAATGAACGCGTCGAACATGTGATCTTGGCCATGCCGTCGG
CAGCGACGAAGGTTAGGCGTGCGGCGACTGATCTTGCCGTGCATGCCGGAGCGAAGGTCTTTATGGTGCCTGGGCTCGAA
GACGTGATGGCCGGGCGGGTTGCGGTGTCCTCTCTTCGTCGGGTCGAGATCGAGGATCTCTTGGGGCGCGAGCCTGTGTG
GATCGACACTCCGCATATCGAGGCGATGTTTAAGGGTAAGGTCGTGCTGGTCACCGGGGCTGGCGGGTCTATCGGCAGTG
AATTGTGTCGGCAACTAGCGCGCTTTGCACCACGTCGTGTGGTTCTGTATGAGCAGAATGAATTCGCGCTGTACACGATG
GAGCAGTGGTTCGCGAATCACGCACAGGGACTCGAAATTGTGTCCCTCGCGGGAGACGTCAAGGATGCTGCTCGCCTCGA
TGAGGTGTTTGCCGCTTGGCGTCCTGAAGTCGTGTTCCATGCTGCTGCCTACAAGCACGTACCCCTAATGGAATCGGCTA
ACGCTTGGCAGGCGGTCCGGAATAATGTGCTCGGCACATTGCGTGTCGGTGAGGCTGCGCAACATCATGGGGCTGGGCGT
TTCATCCTGGTCTCCACAGACAAGGCGGTGAATCCGACCAACGTCATGGGTGCAAGCAAGCGCTTGGCTGAACTTGTCTG
CCACGCTTTGCAGCAGCGTGGTCAGGGCACGCAATTCGAGATAGTGCGCTTCGGCAATGTGCTCGGCAGTACCGGCAGCG
TGATTCCAAAGTTCCAGGAACAGATTGCCCGAGGCGGTCCGGTCACGGTGACCCATCCGGAAATCACGCGCTACTTCATG
TCCATTCCGGAGGCCGCGCAACTCGTCCTGCAGGCTGCGGCCATGGGGCAGGGCGGGGAGATTTTCGTGCTCGACATGGG
TGATCCAGTGAAGATCGTCGATCTCGCTCGCAACATGATTCGCCTGTCCGGTTATACGGAGGGGGAGATTCGCATCGAAT
TCACGGGTTTGCGTCCCGGTGAAAAACTCTATGAGGAACTGCTCGCCGACGCTGAGAAGACTCGGGAGACCCCCCACGCG
AAACTGCGTATTGCCAGATCCCGGTCGGTCGCGCCTGCTTTTTTCGCAGATTTGAAGTCCTGGCTTGTACAGCCCGGCGT
TGTCGGGGATGAGGAGGTGCGTAGAATACTGCAGCGCTGGGTGCCGGAGTACCAGCCTCCACGCGGACGCCCGACTTTGC
GCGTCGTGCGTCACGGCGACGTTCAGGATGAGCGGCGCGCACTGCCGTAG

Protein sequence : 
MKRLSRSAFVLLFDLAAACTAWVTTYVLRFNFEWPAEYGVQIAWGLLVLLPTHAVVCKRAGLYRGIWVFASLPDLARVLR
AVAISSLAVWAFVAVYRASPGVPRSTLILYPMLLVLIMAGGRAAYRMWKEHRLYGGLIAKGKPVVVVGAGRGGAMLLREL
QRSPDWRVVGLVDDDSDKWGRELLGLPVLGPVKALPQILVNERVEHVILAMPSAATKVRRAATDLAVHAGAKVFMVPGLE
DVMAGRVAVSSLRRVEIEDLLGREPVWIDTPHIEAMFKGKVVLVTGAGGSIGSELCRQLARFAPRRVVLYEQNEFALYTM
EQWFANHAQGLEIVSLAGDVKDAARLDEVFAAWRPEVVFHAAAYKHVPLMESANAWQAVRNNVLGTLRVGEAAQHHGAGR
FILVSTDKAVNPTNVMGASKRLAELVCHALQQRGQGTQFEIVRFGNVLGSTGSVIPKFQEQIARGGPVTVTHPEITRYFM
SIPEAAQLVLQAAAMGQGGEIFVLDMGDPVKIVDLARNMIRLSGYTEGEIRIEFTGLRPGEKLYEELLADAEKTRETPHA
KLRIARSRSVAPAFFADLKSWLVQPGVVGDEEVRRILQRWVPEYQPPRGRPTLRVVRHGDVQDERRALP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-93 46
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 1e-96 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
capDb YP_007553016.1 capsular polysaccharide biosynthesis protein VFG0029 Protein 9e-82 44
capDb YP_007553016.1 capsular polysaccharide biosynthesis protein VFG1300 Protein 4e-92 42