Gene Information

Name : rkpS/bexA/ctrD (AZKH_0250)
Accession : YP_007549572.1
Strain : Azoarcus sp. KH32C
Genome accession: NC_020516
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 284769 - 285425 bp
Length : 657 bp
Strand : -
Note : -

DNA sequence : 
ATGATCACGATTTCGAATCTTACCAAGCGGTATCCCACGCGAAGCGGGCTCGTTACGGTGCTTGATGGCATCAACTTGAC
CATCCAGCCGGGTGACAAGGTTGGAGTGCTTGGTCGCAATGGCGCAGGAAAATCAACCCTGATCCGTTTGATCAGCGGCG
CGGAGCGACCGACCGCAGGGCATATTCACCGGGGCATGAGCATTTCCTGGCCGCTCGCCTTCGGCGGGGCGTTCCAGGGG
TCGCTCACCGGCCTGGACAATTTGCGGTTCATCTGTCGCGTCTACGGAGTCGACTTTCGCCCTCGCGTCAGCTATGTCGA
GGAGTTTTCAGAACTTGGCCGCTATCTCAGAGAGCCAGTCAAGACCTATTCTTCTGGAATGCGTGCGCGTCTAGCCTTCG
CGATCTCGATGGCTATTGAGTTCGACTGCTACCTCATCGACGAAATCATTGCAGTGGGGGATAGCCGGTTCCATGAGAAA
TGCCAGCGGGAACTGTTCGAGAAGCGGAACGACCGAGCGATGATCATCGTTTCTCACCATCCGGAATTCATTCAGAGCCA
TTGCAGGAATGCCGCAGTCCTCGGGGGAGGAAAGCTGTCGTCCTTCGATAACCTGACCGACGCGCTGTCCTTTTACAATG
CTGGGTCGTTCCAATGA

Protein sequence : 
MITISNLTKRYPTRSGLVTVLDGINLTIQPGDKVGVLGRNGAGKSTLIRLISGAERPTAGHIHRGMSISWPLAFGGAFQG
SLTGLDNLRFICRVYGVDFRPRVSYVEEFSELGRYLREPVKTYSSGMRARLAFAISMAIEFDCYLIDEIIAVGDSRFHEK
CQRELFEKRNDRAMIIVSHHPEFIQSHCRNAAVLGGGKLSSFDNLTDALSFYNAGSFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 1e-65 63
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 3e-44 48
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 1e-44 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
rkpS/bexA/ctrD YP_007549572.1 capsule polysaccharide export ATP-binding protein VFG2563 Protein 2e-71 65
rkpS/bexA/ctrD YP_007549572.1 capsule polysaccharide export ATP-binding protein VFG0696 Protein 4e-65 64
rkpS/bexA/ctrD YP_007549572.1 capsule polysaccharide export ATP-binding protein VFG0258 Protein 4e-66 63
rkpS/bexA/ctrD YP_007549572.1 capsule polysaccharide export ATP-binding protein VFG1449 Protein 1e-44 48