Gene Information

Name : WQG_16250 (WQG_16250)
Accession : YP_007548693.1
Strain : Bibersteinia trehalosi USDA-ARS-USMARC-192
Genome accession: NC_020515
Putative virulence/resistance : Virulence
Product : RTX-III toxin determinant D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1785718 - 1787154 bp
Length : 1437 bp
Strand : -
Note : RTX-III toxin determinant D of Gammaproteobacteria UniRef RepID=RTX3D_ACTPL

DNA sequence :
ATGAAAATATGGCTTAGCGGTATTTATGAATTTTTCCTACGCTATAAAAATATCTGGGTAGAAGTATGGAAAATTCGTAA
AGAACTAGATCACCCAAATAGAAAAAAAGATGAAAGTGAATTTCTACCTGCGCACTTAGAATTGATTGAAACACCAGTTT
CGAAAAAGCCTCGCTTAATTTCCTATTCAATTATGCTATTTTTAATAATAGCAATCGTACTTGCGAGTGTGAGTAAAGTT
GAAATTGTGGCGACTGCTCCCGGTAAATTAACTTTTAGTGGCAGAAGTAAAGAAATTAAACCGATTGAAAACGCCATTGT
ACAAGAAATTTTCGTTAAAGATGGGCAGTTTGTGGAAAAAGGGCAATTATTAGTCAGCTTAACTGCATTGGGTTCTGATG
CAGATATCAAAAAGACCATTGCTTCACTTTCTTTAGCTAAACTGGAGAGCTATCGCTACCAAACTTTGCTTACTGCCATT
GAAAAAGAGTCCTTGCCGGTGATTGATTTATCTAGAACCGAATTTAAAGATTCATCGGAAGAAGATCGACTACGTATTAA
ACACTTAATTGAGGAGCAATACACCACTTGGCAAAAACAAAAAACACAGAAAACTTTAGCGTATAAGCGTAAAGAGGCTG
AAAAACAAACAATATTTGCCTATGTCCGTAAATATGAAGGTGCAACACGTATTGAACAAGAAAAATTAAAAGACTTTAAG
GCACTTTATAAACAGAAGTCTTTATCTAAGCACGAACTTCTTGCGCAAGAAAATAAATTAATTGAGGCTCAGAATGAGCT
AGCTGTTTATCGCTCAAAATTAAATGAATTAGAAAATGATCTACTCAATGTAAAAGAAGAACTTGAATTGATCACGCAAT
TCTTTAAAAGCGATGTATTAGAAAAATTAAAACAGCATATTGAAAATGAACGTCAACTTCGGCTTGAATTAGAAAAAAAT
AATCAGCGTAAGCAAGCTTCTATGATTAGAGCGCCGATTTCTGGTACTGTTCAACAATTAAAAATTCATACGATAGGTGG
TGTTGTCACGACAGCGGAAACCCTGATGGTCATGGTACCAGAAGATGATGTATTAGAGGCGAGCGTACTTGTTCAAAACA
AAGATATCGGCTTTGTCACCGCTGGACAAGAGGTAGTGATTAAAGTAGAGACTTTCCCTTATACACGCTATGGTTATTTA
ACTGGCCGAATTAAGCATATTAGTCCCGATGCTATTGAGCAGCCTAATGTCGGCTTAGTCTTTAATGCAACTATCAGTAT
AGATAAAAAGAATCTTAGCTCTCCTGATGGAAGAACCATTGAGTTGGGCTCAGGAATGACGATAACGGCTGAAATCAAAA
CAGGTGAACGTAGTGTAATGAGTTATTTACTCAGCCCACTTGAGGAGTCTATTACAGAAAGCTTAAGGGAACGTTAA

Protein sequence :
MKIWLSGIYEFFLRYKNIWVEVWKIRKELDHPNRKKDESEFLPAHLELIETPVSKKPRLISYSIMLFLIIAIVLASVSKV
EIVATAPGKLTFSGRSKEIKPIENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTIASLSLAKLESYRYQTLLTAI
EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTIFAYVRKYEGATRIEQEKLKDFK
ALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNELENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKN
NQRKQASMIRAPISGTVQQLKIHTIGGVVTTAETLMVMVPEDDVLEASVLVQNKDIGFVTAGQEVVIKVETFPYTRYGYL
TGRIKHISPDAIEQPNVGLVFNATISIDKKNLSSPDGRTIELGSGMTITAEIKTGERSVMSYLLSPLEESITESLRER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyD NP_755449.1 hemolysin D Virulence PAI I CFT073 Protein 4e-134 60
hlyD CAD42037.1 HlyD protein Virulence PAI II 536 Protein 7e-134 60
hlyD AAC61717.1 chromosomal hemolysin D Virulence PAI I CFT073 Protein 2e-118 59
hlyD CAD33761.1 Hemolysin D Virulence PAI I 536 Protein 2e-133 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
WQG_16250 YP_007548693.1 RTX-III toxin determinant D VFG0908 Protein 2e-134 60
WQG_16250 YP_007548693.1 RTX-III toxin determinant D VFG1556 Protein 4e-134 60
WQG_16250 YP_007548693.1 RTX-III toxin determinant D VFG1502 Protein 1e-133 59
WQG_16250 YP_007548693.1 RTX-III toxin determinant D VFG0843 Protein 5e-107 51