|
Name : WQG_11930 (WQG_11930) Accession : YP_007548261.1 Strain : Bibersteinia trehalosi USDA-ARS-USMARC-192 Genome accession: NC_020515 Putative virulence/resistance : Unknown Product : type I restriction enzyme HindVIIP R protein Function : - COG functional category : - COG ID : - EC number : - Position : 1302546 - 1305698 bp Length : 3153 bp Strand : + Note : Type I site-specific restriction-modification system, R (restriction) subunit and helicases COG0610; type I restriction enzyme HindVIIP R protein of Proteobacteria UniRef RepID=T1RH_HAEIN DNA sequence : ATGCTGATCAACGAAAACACCATTGAACAATCCGCCATTGCGACTTTGCAATCTTTGGGCTGGGACTACACCTACGGCAA AACGATTTTGGCAGGTTTAGAACACGAATGGCGGGAGCGAGCCGCTGAGGTGATTTTAAAGCCGCTTTTGGCACAAGCGA TTGCAAAATTCAACCCGAATTTGCCCGCTTATGAGGTGGAAAATGTGGTGGCACAGGTGTGCCGTGCGGAAAGTGGCGAT TTGGCGGAGCGTAACCGTCAGGCTTATGATTGGCTGAGAAATGGGGTGAAAATCACTTATCAGTTGGACGGTGAGCAGGT GTCTGAGGTGGTGCAGCTGATTGATTTTCAGCGTCCGGAAAACAACGATTTTCGTATTGTCAATCAGCTGGATATTGGCG GTAAAAAAGGCAAACGCATTCCTGATTTGATTGGCTTTGTTAATGGCTTGCCGCTGGTGGTATTTGAGCTGAAAAATCCG CTCAAAGAAAATGCCGACATTGGCAAGGCGTTTGCCCAACTGCAAACCTATAAAGATGAAATTTCTGATTTGTTTGTGTT TAATCAGGCACTTGTGATTTCAGACGGCATTGTCGCTCGTATCGGTTCGCTGACCGCCGATTTAGACCGTTTTACCCCTT GGCGTGTGGTTGATGAAAAAAATCAGAGCAAACGCATTGTGTTTGAAGATGAACTCACTGCCCTGCTGCAAGGCGTAATG ACACCGCAAAATCTGCTGGATTATGTGCAGAATTTTGTGGTGTTTGAACGAGACGGCAAAAACCGCTTAATTAAGAAAAT CGGGGCGTATCATCAGTTTTATGGCGTGAATGAAGCGGTGGATTGCACCTTGCTTGCCGCCACAGGCAACCGCAAAATCG GTGTGTTTTGGCATACGCAAGGTTCGGGCAAATCGCTTTCGATGCTGTTTTATGCAGGTAAAGTATTAAGCCAAAGCAGC CTGAAAAATCCAACTTTGGTGTTGGTAACCGACCGCAACGATTTGGACGGTCAGCTTTACGCCACTTTTTGCGGTGGTGA GGCATTGCTCAAACAAACGCCAATCCAAGCCGATGGGCGAGACGAACTCCGCTCTGCCCTTGCCAGTCGTTCAGCAGGCG GTGTGATTTTTACCACCATTCAAAAATTCGGCTTAATGGAGGGTGAGCTTGCCCACCCTGTGCTAAACGAGCGGGAAAAC ATCATTGTGATTACCGATGAAGCCCACCGTTCGCAATATGGCTTCAATCAAAAAATCGACCACAAGGGGCAATATAAAGA AGGCTATGCAAAGCATTTGAGAAGCGCTTTGCCTCATGCCTCTTTTATTGGCTTTACAGGAACGCCAATTGCCCTAGATG ATAGAGACACCCAAGAAGTCTTCGGTAAATATGTCTCAATTTACGATTTTGAAGATGCGGTGGAAGATGGGGCGACTGTG CCAATTATTTATGAGCCACGCCAAATCAGCTTAGGTGAAAGCCGTGAATTTGCCAAAGTGATGGAAGAGGCACAGCAGCT TATTGATGACGATGAAAACAGCGATAACTTCCGCCTGCGTGAAAAACTGCACAGCGTGGATAGCCGTTTGCAAAAAATGG CGGAAGATATTATTGCCCATTACGATGAGCGTACCAAACAGCAAGACGGCAAGGCGATGATTGTGGTGATGAGCCGTGCC ATTTGCGTCAAACTCTATGACAAAATCACCGTCCTTCGCCCCGAATGGCACTCAAACGATGTGCATCAAGGCAGCATTAA AATTGTGATGACAAGCAATGCCAGCGACCCTGCCGAGTGGCAAGTACACAATCAGGACAAAAAAACCTTAGAAAAACGCT TTAAAGACCCAGACGATCCGCTCAAAATCGTGATTGTGCGAGATATGTGGCTGACAGGGTTTGATGCCCCCTGCTGTAAC ACAATGTACATTGATAAACCAATGAGCGGACACAACCTGATGCAGGCAATCGCTCGGGTAAATCGGGTATTTCGCAATAA AAGCCGTGAAAATGGCGGCTTGATTGTGGATTATGTGGGCTTGACCGATGAGCTGGAAAAAGCGATGAAGCAGTACACCA ACGCAGGCGGCAAAGAAAAGCCGGTGCGGGACATTTCAGCGGTGCTGGAAAAAATGGTGGAACATATCACGGTCATTCGT GGGCAATTTGCCACGCCGATTGACGGACAAGCAGTTGATATTGCCAAAATGTTGCAAATCAGCGAACCGCCTAAACTACT CAATACGATTTTGCAGGCTGCCAACCATATTCTTGCCCTAGACCGCATTCAACCGGCTGATAACACTGCCAAAGACAAAA CCCCACGCAAAAACGCTTTTTTACAGTCGGTACGCTTGGCGAAAAAAGGCTATGCTTTGTGTGGAGCATTAAAAGCGGTT GAACCCTATAAACAGGAATTGGCGTTTTATGATGCAGTGCGTGCCACCATTATCAAAAACAGCACCGCTCCTCGCAATTC TTCGAGCGAAAATGACCGCTTGTTGCAGCTTACCGCCTTGATGAATCGTGCGGTACAGTCGGACGGTGTGGTGGATTTAT TTGATTTGCTGAAAAAAGACCGCCCAAACATCAACCTGCTTTCTGATGAGTTTTTGGAAACAGTGAAAAACAGCCCAACC AAAGATTTGTGGCTGTCGGCAATGGAACGTTATCTTGCCGCACAACTGCGTGAACAAAGCGGTGCCAATCTTGCCACCAA AAAAGCATTTGAACAGAAACTCAAAGAGGCAATGAACCAATACCACAACCACAATTTAAGCGTATTGGAAATTTTAGAAG AGCTGATCGCACTTGCCAAAGAGTTTGAAGCTCGCCAAAAACGAGGGGAAGCGTTGGGACTAAACCCGGCGGAAATGGCG TTTTATGATGCTTTGGCACGCAATGAAAGTGCGGTGCGGGAAATGGGCGATGAGGTATTGATGAACCTTGCCAAAGACAT CACCGATAAATTACGCAAATCCGTCACCGTAGATTGGCAATATAAAGACTCGGTGCGTGCCAAAATGCGAACCTTAATCC GCATTGCCCTGCGTAGCTATAAATACCCGCCCGATTTACAGGCAGAAGCGATTGAGTTTGTGTTGCAACAAGCGGAAGAG ATCGCCGGAGAATTGAGCGAAAACGACATATAA Protein sequence : MLINENTIEQSAIATLQSLGWDYTYGKTILAGLEHEWRERAAEVILKPLLAQAIAKFNPNLPAYEVENVVAQVCRAESGD LAERNRQAYDWLRNGVKITYQLDGEQVSEVVQLIDFQRPENNDFRIVNQLDIGGKKGKRIPDLIGFVNGLPLVVFELKNP LKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADLDRFTPWRVVDEKNQSKRIVFEDELTALLQGVM TPQNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYGVNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQSS LKNPTLVLVTDRNDLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELAHPVLNEREN IIVITDEAHRSQYGFNQKIDHKGQYKEGYAKHLRSALPHASFIGFTGTPIALDDRDTQEVFGKYVSIYDFEDAVEDGATV PIIYEPRQISLGESREFAKVMEEAQQLIDDDENSDNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMIVVMSRA ICVKLYDKITVLRPEWHSNDVHQGSIKIVMTSNASDPAEWQVHNQDKKTLEKRFKDPDDPLKIVIVRDMWLTGFDAPCCN TMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGLTDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIR GQFATPIDGQAVDIAKMLQISEPPKLLNTILQAANHILALDRIQPADNTAKDKTPRKNAFLQSVRLAKKGYALCGALKAV EPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFDLLKKDRPNINLLSDEFLETVKNSPT KDLWLSAMERYLAAQLREQSGANLATKKAFEQKLKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLNPAEMA FYDALARNESAVREMGDEVLMNLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRSYKYPPDLQAEAIEFVLQQAEE IAGELSENDI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 43 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
