Gene Information

Name : WQG_1160 (WQG_1160)
Accession : YP_007547193.1
Strain : Bibersteinia trehalosi USDA-ARS-USMARC-192
Genome accession: NC_020515
Putative virulence/resistance : Resistance
Product : Tetracycline resistance protein, class E
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 108007 - 109209 bp
Length : 1203 bp
Strand : +
Note : dipeptide/tripeptide permease D PRK15462; Tetracycline resistance protein, class E of root UniRef RepID=TCR5_ECOLX

DNA sequence : 
ATGAATAAATCAATTATTATTATACTGCTGATCACCGTATTAGATGCCATTGGTATCGGGCTTATCATGCCAGTACTCCC
TACTCTATTAAATGAATTTGTCAGTGAAAATTCACTGGCAACCCATTACGGTGTGCTATTAACGCTCTATGCTACCATGC
AGGTTATTTTTGCTCCTATTCTAGGACGACTGTCTGATAAATACGGCAGAAAACCCATCTTGCTGTTTTCCCTTTTAGGC
GCGGCACTCGACTATCTTTTAATGGCATTCTCAACCACACTTTGGATGCTCTATATTGGGCGCATCATTGCGGGGATCAC
AGGCGCAACAGGTGCCGCATGTGCATCAGCGATGAGTGATGTGACTCCCGCTAAAAATCGAACTCGCTATTTTGGTTTCT
TAAGTGGTGCTTTTGGTGTTGGCCTTATTATCGGCCCAATGCTAGGGGGATTATTAGGTGATATCAGTGCTCATATGCCA
TTTATTTTTGCCGCTATTTCACACTCGATATTATTAATACTCTCTTTGCTCTTTTTCCGAGAAACACAAAAAAGAGAAGC
GCTTGTTGCCAATAGGACACCTGAAAACCAAACTGCCTCAAATACAGTCACTGTTTTTTTTAAGAAAAGCCTCTACTTTT
GGTTAGCAACCTATTTTATTATCCAGCTTATCGGGCAAATTCCTGCCACCATCTGGGTGCTGTTTACACAATATCGTTTT
GATTGGAACACAACTTCTATCGGTATGTCTTTGGCGGTTCTGGGTGTATTACATATTTTCTTTCAGGCGATTGTCGCTGG
GAAATTGGCACAAAAATGGGGCGAAAAAACCACCATTATGATCAGTATGTCTATTGATATGATGGGCTGTTTATTATTAG
CGTGGATAGGCCACGTTTGGGTCATCTTACCAGCATTAATTTGCTTAGCGGCAGGAGGTATGGGGCAACCCGCATTACAA
GGTTATTTATCAAAATCTGTCGATGATAATGCGCAAGGGAAATTACAAGGTACTCTGGTGAGCCTAACCAATATTACCGG
GATCATTGGTCCCCTTTTATTTGCCTTTATTTATAGTTATAGCGTCGCTTATTGGGATGGTCTGTTATGGCTGATGGGGG
CAATACTTTATGCTATGTTGCTTATTACCGCTTATTTTCACCAAAGAAAAACCACACCTAAAGCTGTTATTTCAACCCCT
TAA

Protein sequence : 
MNKSIIIILLITVLDAIGIGLIMPVLPTLLNEFVSENSLATHYGVLLTLYATMQVIFAPILGRLSDKYGRKPILLFSLLG
AALDYLLMAFSTTLWMLYIGRIIAGITGATGAACASAMSDVTPAKNRTRYFGFLSGAFGVGLIIGPMLGGLLGDISAHMP
FIFAAISHSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKSLYFWLATYFIIQLIGQIPATIWVLFTQYRF
DWNTTSIGMSLAVLGVLHIFFQAIVAGKLAQKWGEKTTIMISMSIDMMGCLLLAWIGHVWVILPALICLAAGGMGQPALQ
GYLSKSVDDNAQGKLQGTLVSLTNITGIIGPLLFAFIYSYSVAYWDGLLWLMGAILYAMLLITAYFHQRKTTPKAVISTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tet(H) YP_005176248.1 tetracycline efflux protein, class H Not tested ICEPmu1 Protein 4e-149 99
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 5e-75 54
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 4e-75 54
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 6e-75 54
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 8e-75 54
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 8e-75 54
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 8e-75 54
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 8e-75 54
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 7e-75 54
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 3e-73 53
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 4e-66 50
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 3e-62 49
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 3e-62 49
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 3e-62 49
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 3e-62 49
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 7e-61 47
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 7e-61 47
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 7e-61 47
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 9e-61 47
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 6e-61 47
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 5e-61 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E Y15510.gene.p01 Protein 6e-150 99
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AF038993.gene.p01 Protein 3e-124 79
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E CP004022.1.gene2534. Protein 4e-125 79
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E NC_010558.1.6275971. Protein 3e-75 54
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AB084246.gene.p01 Protein 2e-75 54
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AJ250203.gene.p01 Protein 4e-75 54
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E V00611.gene.p01 Protein 9e-75 53
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E L06798.gene.p01 Protein 2e-71 52
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AF133139.gene.p01 Protein 1e-64 50
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AF133140.gene.p01 Protein 2e-66 50
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E NC_010410.6002612.p0 Protein 2e-66 50
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E Y19114.gene.p01 Protein 7e-66 49
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AF070999.gene.p01 Protein 2e-61 49
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E Y19116.gene.p01 Protein 2e-63 49
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E L06940.gene.p01 Protein 2e-65 49
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E X75761.gene.p01 Protein 7e-60 47
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E NC_010410.6002597.p0 Protein 3e-61 47
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E CP001485.1.gene2821. Protein 3e-61 47
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AF534183.gene.p01 Protein 2e-61 47
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E NC_011586.7045189.p0 Protein 4e-55 46
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AY264780.2.gene3.p01 Protein 1e-51 42
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AY743590.gene.p01 Protein 1e-47 42
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AJ420072.gene.p01 Protein 2e-54 42
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E AF121000.gene.p01 Protein 5e-57 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
WQG_1160 YP_007547193.1 Tetracycline resistance protein, class E VFG1036 Protein 3e-75 54