Gene Information

Name : WQG_1040 (WQG_1040)
Accession : YP_007547181.1
Strain : Bibersteinia trehalosi USDA-ARS-USMARC-192
Genome accession: NC_020515
Putative virulence/resistance : Resistance
Product : Dihydropteroate synthase type-2
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 98550 - 99578 bp
Length : 1029 bp
Strand : +
Note : dihydropteroate synthase PRK13753; Dihydropteroate synthase type-2 of root UniRef RepID=DHP2_ECOLX

DNA sequence :
ATGGGGAATGTAAGTTCCCATACCTATACATACGCAGGAAAACGATCATTTGCTTGCAATTGCGAAGAAAATAATGGAAA
ATGTGGACTGGCGCCACCTAACAACCGGTTCGAGCGGACTCACGGGACAAGCCCGTTCGCAGCTCAACCGAAAGTTAGGT
TGACGCCTTCGGCGCGGAGGAAAATGGAATATACAAGTAAATCACAAATAGCTCGAAATAAATCGCTCATCATTTTCGGC
ATCGTCAACATAACCTCGGACAGTTTCTCCGATGGAGGCCGGTATCTGGCGCCAGACGCAGCCATTGCGCAGGCGCGTAA
GCTGATGGCCGAGGGGGCAGATGTGATCGACCTCGGTCCGGCATCCAGCAATCCCGACGCCGCGCCTGTTTCGTCCGACA
CAGAAATCGCGCGTATCGCGCCGGTGCTGGACGCGCTCAAGGCAGATGGCATTCCCGTCTCGCTCGACAGTTATCAACCC
GCGACGCAAGCCTATGCCTTGTCGCGTGGTGTGGCCTATCTCAATGATATCCGCGGTTTTCCAGACGCTGCGTTCTATCC
GCAATTGGCGAAATCATCTGCCAAACTCGTCGTTATGCATTCGGTGCAAGACGGGCAGGCAGATCGGCGCGAGGCACCCG
CTGGCGACATCATGGATCACATTGCGGCGTTCTTTGACGCGCGCATCGCGGCGCTGACGGGTGCCGGTATCAAACGCAAC
CGCCTTGTCCTTGATCCCGGCATGGGGTTTTTTCTGGGGGCTGCTCCCGAAACCTCGCTCTCGGTGCTGGCGCGGTTCGA
TGAATTGCGGCTGCGCTTCGATTTGCCGGTGCTTCTGTCTGTTTCGCGCAAATCCTTTCTGCGCGCGCTCACAGGCCGTG
GTCCGGGGGATGTCGGGGCCGCGACACTCGCTGCAGAGCTTGCCGCCGCCGCAGGTGGAGCTGACTTCATCCGCACACAC
GAGCCGCGCCCCTTGCGCGACGGGCTGGCGGTATTGGCGGCGCTGAAAGAAACCGCAAGAATTCGTTAA

Protein sequence :
MGNVSSHTYTYAGKRSFACNCEENNGKCGLAPPNNRFERTHGTSPFAAQPKVRLTPSARRKMEYTSKSQIARNKSLIIFG
IVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADVIDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQP
ATQAYALSRGVAYLNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAALTGAGIKRN
RLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRALTGRGPGDVGAATLAAELAAAAGGADFIRTH
EPRPLRDGLAVLAALKETARIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sul2 AEZ06044.1 Sul2, sulphonamide-insensitive dihydropteroate synthase Not tested Tn6167 Protein 5e-112 100
sul2 AEA34678.1 dihydropteroate synthase Not tested Not named Protein 4e-112 100
sulI2 AFV47959.1 sulphonamide-insensitive dihydropteroate synthase SulI2 Not tested AbaR25 Protein 4e-112 100
BJAB07104_00246 YP_008207711.1 Dihydropteroate synthase-related enzyme Not tested AbaR25 Protein 3e-111 99
BJAB0868_00253 YP_008211579.1 Dihydropteroate synthase-related enzyme Not tested AbaR26 Protein 9e-111 99
ABK1_0255 YP_005512827.1 Dihydropteroate synthase type-2 Not tested AbaR4d Protein 3e-111 99
sul1 AGK06980.1 Sul1 dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 ADI24148.1 dihydropteroate synthase Not tested AbaR1 Protein 6e-54 53
sul1 YP_005797135.1 sulfonamide-resistant dihydropteroate synthase Not tested AbaR4e Protein 8e-54 53
sul1 AGK07017.1 Sul1 dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 ADZ05756.1 dihydropteroate synthase Not tested AbaR10 Protein 6e-54 53
sul1 YP_005797151.1 sulfonamide-resistant dihydropteroate synthase Not tested AbaR4e Protein 8e-54 53
sul1 AGK07075.1 Sul1 dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 AET25390.1 Sul1 Not tested PAGI-2(C) Protein 6e-54 53
sul1 ADZ05806.1 dihydropteroate synthase Not tested AbaR20 Protein 1e-53 53
sulI YP_006098378.1 dihydropteroate synthase type-1 Not tested Tn2411 Protein 8e-54 53
sul1 AGK07110.1 Sul1 dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 AFG30113.1 Sul1 Not tested PAGI-2 Protein 6e-54 53
sul1 ACN81027.1 Sul1, sulfonamide-resistant dihydropteroate synthase Not tested AbaR5 Protein 8e-54 53
sul1 AFV53112.1 dihydropteroate synthase Not tested AbGRI2-1 Protein 6e-54 53
sul1 AGF34990.1 Sul1 dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 AAG03004.2 sulfonamide resistance protein Not tested SGI1 Protein 6e-54 53
sul1 AGK36648.1 Sul1 Not tested AbaR26 Protein 6e-54 53
sul1 AGF35029.1 Sul1 dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 ABB48429.1 sulfonamide insensitive dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 ACN81038.2 Sul1, sulfonamide-resistant dihydropteroate synthase Not tested AbaR5 Protein 7e-54 53
sul1 AGF35064.1 Sul1 dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 ACY75524.1 Sul1 Not tested Tn6060 Protein 6e-54 53
sul1 ADZ05750.1 dihydropteroate synthase Not tested AbaR10 Protein 5e-54 53
sul1 AGK06934.1 Sul1 dihydropteroate synthase Not tested SGI1 Protein 6e-54 53
sul1 ACY75531.1 Sul1 Not tested Tn6060 Protein 6e-54 53
ACICU_00228 YP_001844887.1 dihydropteroate synthase Not tested AbaR20 Protein 8e-54 53
sul1 YP_005160002.1 dihydropteroate synthase Not tested Not named Protein 8e-54 53
sul1 ACS32048.1 Sul1; sulfonamide-insensitive dihydropteroate synthase Not tested SGI2 Protein 6e-54 53
sul1 ACF06160.1 dihydropteroate synthase Not tested Tn5036-like Protein 4e-54 53
sul1 ACF06164.1 dihydropteroate synthase Not tested Tn5036-like Protein 1e-53 53
sulI CAJ77050.1 sul1delta fusion protein Not tested AbaR1 Protein 4e-54 53
sulI CAJ77089.1 sul1delta fusion protein Not tested AbaR1 Protein 4e-54 53
sulI CAJ77053.1 sul1delta fusion protein Not tested AbaR1 Protein 3e-54 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 DQ464881.1.gene2.p01 Protein 1e-110 99
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 AJ459418.gene.p01 Protein 6e-57 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 DQ143913.1.gene6.p01 Protein 6e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 U37105.2.gene6.p01 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 AY162283.2.gene6.p01 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 EF118171.1.gene7.p01 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 AB061794.1.gene5.p01 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 AF313471.1.gene7.p01 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 AY339625.2.gene19.p0 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 AY740681.1.gene7.p01 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 HQ451074.1.gene20.p0 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 AF174129.3.gene6.p01 Protein 4e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 AF191564.1.gene5.p01 Protein 3e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 NC_011586.7045179.p0 Protein 2e-54 53
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 NC_011586.7045208.p0 Protein 3e-53 52
WQG_1040 YP_007547181.1 Dihydropteroate synthase type-2 CP002695.1.gene1085. Protein 2e-32 41