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Name : C427_5484 (C427_5484) Accession : YP_007546929.1 Strain : Glaciecola psychrophila 170 Genome accession: NC_020514 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : - COG ID : - EC number : - Position : 5266533 - 5268590 bp Length : 2058 bp Strand : - Note : - DNA sequence : ATGAAGTGTATGTCACGCAATCGCCCTCATGTATTAAAAGGATTACTCCTTGTTATTGGCAGTGCGTTTTTTGCTATTTC GAGCCTAGTGGCCGCAGCGGATTATTCCCCAAATTTTAAAAACACTGAAATCAGCGAATTTATTAATATTGTGGGTAAAA ATCTCAAGAAGACCATCATTGTTGATCCTAATGTGCGGGGTAAAATTACCGTACGTAGTTATGATTTGCTCAATGAAGAG CAGTATTTCCAGTTTTTCTTAAACGTACTGCAAGTTTACGGTTATTCAGCTGTCACAATGTCCAGTGGTGTCATCAAGGT TATACGCTCCAAAGATGCTAAGTCCTCGAATATACCGGTAGTGGAAGGCAGCCCTTTTGATGGTGATGAAATGATCACCC GAGTAATGCCAGTATATAATGTGCCAGTGCGAGAACTCGCACCACTGTTGCGCCAACTTAACGATACAGCTGGCGGTGGT AACGTGGTTAGTCACGATGCATCCAACGTAATGATGCTCACCGGCCGTGCTGCTGTCGTTAATCGCCTAGTTGAAATAAT TGAACGGGTAGACAAGGCAGGTGACGAAGAAGTCGAGATTATTAAACTAAAATATGCTTCTGCCACCGAGTTAGTGCGTA TTATCGATAGCGTCAATAAGTCTCAAGGTAAGTCCAACACAGGGGGCAAATCCGACCCAAGAGTGGTAGCCGATGATAGA ACCAATAGTATTATTGTCAGTGGTGACGTTAAAGCCCGTAAACGTTTGATTAATTTAGTGCAGCGAATGGACTCTGAATT AGAAACCAGTGGTAATACCCGTGTTATTTTCCTCAATTACGCAAAATCTGAAGATTTAGTCAAAGTATTACAAGGTGTCA GTGCCAGCATCCAAGCTGAAGAAAAAGGCGCAATTAAGGGCCGCCAAACCTCTAGTCGTGAAGTTAGTATTGACTCTCAC CAAGATTCAAACGCACTAGTGATAACCGCTGAGCCAGATATGATGCGCTCGCTCGAAGAAGTGATACGTCAGTTAGATGT GCGCCGTGCACAAGTGCAAGTAGAAGCGATTATTGTTGAAGTGTTTGAAGGTGATGGCACCACGTTAGGGGTGCAATGGG CCAATGAAAAAGGTGGCGGCACACAATTTAACAATGGTGTCGTGGGCATTGGATCCCTTGCTGTCGCGGTTGATCAAGCA CAAGACAAAGTCATTGTAGATTCCATAACCACGACTTCTAACGGTGATGCAGTGGTTGTACCCACAGAAAAAACCCAACT TGGGGATTTAACCTCTTTAGCCTCCTTACTTGGAGGCGTGAACGGATTCCTTCTTGGCGGCGTCTCTGGCGGATGGGGTG CAGTATTACAAGCCGTGAGCACAGACACCAATTCAAATATTCTTGCCACTCCACATCTAACCACTATGGATAATGAAGAA GCATTTTTTATAGTGGGCCAAGAAGTGCCAATTATTACTGGCTCAACCACGGGCTCGGGTAATTCGAATCCCTTTCAGTC TGTCGATCGCCAAGAAGTGGGGATCAAGCTAAAAGTGACGCCACAAATTAACGAAGGCGATGCCGTACAATTGTTAATTG AGCAAGAAGTCTCTAGCATCAGTGGCGCTACATCAGTTGACGTTATTATTAATAAGCGCGAAATTAAAACCTCTGTCATC GTAGATGATGGTGGCACTATTGTGTTGGGGGGGTTGATAGATGAAGACGTACAAGAGAGTGTTTCTAAAGTTCCATTATT AGGGGATATTCCAATTTTAGGTCACTTGTTTAAGTCAACATCAACCAGTGTCCGTAAGCGTAATTTAATGGTATTTATTC GTCCTACCATAATTCGTGATGGTGTGACAATGAACGAGATAAGCCACAAAAAATATCAATATATTCGGGCCCAACAATTA AAACGCCAGGCCGACGGCATTCCATTGATGCCCAATACTGACGGCCCATCTTTGCCAGATTGGGATGACAAACTAAGCTT ACCACCGTCATTTTCCGATTATATTTTGAACAAAGACAAAGAAAAGGATAACGACTAG Protein sequence : MKCMSRNRPHVLKGLLLVIGSAFFAISSLVAAADYSPNFKNTEISEFINIVGKNLKKTIIVDPNVRGKITVRSYDLLNEE QYFQFFLNVLQVYGYSAVTMSSGVIKVIRSKDAKSSNIPVVEGSPFDGDEMITRVMPVYNVPVRELAPLLRQLNDTAGGG NVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVEIIKLKYASATELVRIIDSVNKSQGKSNTGGKSDPRVVADDR TNSIIVSGDVKARKRLINLVQRMDSELETSGNTRVIFLNYAKSEDLVKVLQGVSASIQAEEKGAIKGRQTSSREVSIDSH QDSNALVITAEPDMMRSLEEVIRQLDVRRAQVQVEAIIVEVFEGDGTTLGVQWANEKGGGTQFNNGVVGIGSLAVAVDQA QDKVIVDSITTTSNGDAVVVPTEKTQLGDLTSLASLLGGVNGFLLGGVSGGWGAVLQAVSTDTNSNILATPHLTTMDNEE AFFIVGQEVPIITGSTTGSGNSNPFQSVDRQEVGIKLKVTPQINEGDAVQLLIEQEVSSISGATSVDVIINKREIKTSVI VDDGGTIVLGGLIDEDVQESVSKVPLLGDIPILGHLFKSTSTSVRKRNLMVFIRPTIIRDGVTMNEISHKKYQYIRAQQL KRQADGIPLMPNTDGPSLPDWDDKLSLPPSFSDYILNKDKEKDND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-147 | 52 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 3e-156 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| C427_5484 | YP_007546929.1 | general secretion pathway protein D | VFG2047 | Protein | 4e-146 | 52 |
