Gene Information

Name : fliP (C427_3659)
Accession : YP_007545115.1
Strain : Glaciecola psychrophila 170
Genome accession: NC_020514
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3510055 - 3510810 bp
Length : 756 bp
Strand : -
Note : -

DNA sequence :

ATGAAAAAGACATGTATGCGTGTTTGTTTGTTGTTGTTATTAAGTATTGTTAGTGGATACGTCTTGGCAGAGCCTGGGAT
ACCTGCTCTAACGCTAACTGACAACCCAGATGGAAGCAAAGATTATACTATGACCTTGCAAGTTGTCGCTATCATGACGT
CTTTGAGCCTACTTCCTGCTTTTGTGATGATGATGACGTCCTTTACTCGGATAATTATTGTTTTATCTATTTTGCGTCAA
GCAATAGGTTTGCAGCAATCACCCTCGAATCAGATTTTGATTGGTGTAAGTTTGTTTCTGTCGATGTTTATTATGGCCCC
TGTGTTTGAAAAGATAAACGAAACGGCACTACAGCCTTACTTAAATGAAGAACTGACATCAATACAAGCCTATGAAATAG
GAAAAGAGCCATTAAGGGCTTTTATGTTGGCTCAAACAAGGGTTAAAGATTTAGAAACCTTTGTACAAATCGGTGGAATG
GATGGGCAATTTCAAGACCCCGTCGACGTGCCTATGAACGTTCTGATCCCTGCCTTTGTGACAAGCGAACTCAAGACTGC
GTTTCAAATTGGTTTTATGTTGTTTATTCCCTTTCTGATTTTAGATTTAGTGGTCGCATCAATTTTGATGGCGATGGGCA
TGATGATGTTGTCACCTATGATCGTGTCATTGCCCTTTAAGTTGATGTTATTTGTGTTGGTGGATGGCTGGAATTTAATT
TTTGGTACATTAGCCAATAGTTTTGGGATGGGTTAG

Protein sequence :

MKKTCMRVCLLLLLSIVSGYVLAEPGIPALTLTDNPDGSKDYTMTLQVVAIMTSLSLLPAFVMMMTSFTRIIIVLSILRQ
AIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLNEELTSIQAYEIGKEPLRAFMLAQTRVKDLETFVQIGGM
DGQFQDPVDVPMNVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLI
FGTLANSFGMG

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcR	ABA47279.1	HrcR	Virulence	S-PAI	Protein	4e-22	42
XC_3016	YP_244084.1	type III secretion system protein	Virulence	Hrp PAI	Protein	9e-25	41
hrcR	NP_636600.1	type III secretion system protein	Virulence	Hrp PAI	Protein	9e-25	41
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	2e-21	41
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	2e-21	41
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	2e-21	41
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	2e-25	41
escR	AFO66317.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	3e-24	41
escR	AFO66400.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	3e-24	41
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	1e-23	41
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	9e-24	41
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	1e-23	41
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	1e-23	41
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	1e-23	41
escR	AAK26700.1	EscR	Virulence	LEE	Protein	1e-23	41
escR	AAL57527.1	EscR	Virulence	LEE	Protein	1e-23	41
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	1e-23	41
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	1e-23	41
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	3e-23	41
escR	AAC31528.1	L0049	Virulence	LEE	Protein	9e-24	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
fliP	YP_007545115.1	flagellar biosynthesis protein FliP	VFG1259	Protein	9e-64	66
fliP	YP_007545115.1	flagellar biosynthesis protein FliP	VFG2016	Protein	8e-56	60
fliP	YP_007545115.1	flagellar biosynthesis protein FliP	VFG2338	Protein	2e-48	54
fliP	YP_007545115.1	flagellar biosynthesis protein FliP	VFG2494	Protein	2e-53	52
fliP	YP_007545115.1	flagellar biosynthesis protein FliP	VFG0044	Protein	1e-23	42
fliP	YP_007545115.1	flagellar biosynthesis protein FliP	VFG0394	Protein	7e-24	41
fliP	YP_007545115.1	flagellar biosynthesis protein FliP	VFG0827	Protein	5e-24	41