Gene Information

Name : C427_2313 (C427_2313)
Accession : YP_007543770.1
Strain : Glaciecola psychrophila 170
Genome accession: NC_020514
Putative virulence/resistance : Unknown
Product : ISEch10 OrfB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2195394 - 2196206 bp
Length : 813 bp
Strand : +
Note : -

DNA sequence : 
ATGTGCAAGGTGTTAAATGTCCACCGCAGCGGTTTTTACGCTTGGTTGAAAGAGCCTCAATCTGATGCAGAAAAAGACAA
TGTACGATTGCTTGAACAGATTAAAGCCAGTTATGTTCAAAGTGGCGGTGTGTATGGCAGTCCACGCATCACACATGAGC
TGCGCCGTTTGGGTGAAACATGCGGTGAAAACCGCGTTGCTAAGTTGATGAAGCAAGCCAAACTCAGAGCTAATATTGGC
TATAAACGGCGCTACTTTAAGCCTTCTACGCCTCATATTGCAGCAGATAACCATCTACAGCAGCAATTTGTTGTGTGTGA
GCCTGATACCGCTTGGGTTGGAGATATTACTTACATCAAGACTTATGAGGGATGGTTGTATCTGGCTGTCGTATTGGACT
TGTTCTCACGCAAAGTAATTGGTTGGTCAATGCAGCCGACTATGACATCGGATATTGTGATTAAAGCGCTGCTCATGGCA
GTATGGCAACGGCCCAAAGCAACACAGGTGATTGTTCACAGCGATCAAGGAAGCCAATATGCTAGCGGTGACTATCGAGA
CTTCCTGAAAGCGCATAATCTGACTCCGAGTATGAGTAGACGAGGACATTGTCTGGATAATGCTGTTGCAGAAAGTTTTT
TCCACTCGCTCAAGACTGAACGTGTAAAGCGAAAAGTGTACGCAACCCGAAGTGAAGCCAAAGCAGATTTGTTTGATTAC
ATAGAAGTGTTTTACAATCGAACGCGACTGCATAGCCATCTTGGACATGTGTCTCCAGATGAATATGAAATCATGTATTC
ACAGGCAAGCTAA

Protein sequence : 
MCKVLNVHRSGFYAWLKEPQSDAEKDNVRLLEQIKASYVQSGGVYGSPRITHELRRLGETCGENRVAKLMKQAKLRANIG
YKRRYFKPSTPHIAADNHLQQQFVVCEPDTAWVGDITYIKTYEGWLYLAVVLDLFSRKVIGWSMQPTMTSDIVIKALLMA
VWQRPKATQVIVHSDQGSQYASGDYRDFLKAHNLTPSMSRRGHCLDNAVAESFFHSLKTERVKRKVYATRSEAKADLFDY
IEVFYNRTRLHSHLGHVSPDEYEIMYSQAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpB CAB61574.1 transposase B Not tested HPI Protein 5e-44 45
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-43 45
tnpA AAD44733.1 TnpA Not tested SHI-2 Protein 3e-39 45
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 5e-48 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 5e-48 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-47 44
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 1e-35 44
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 1e-35 44
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-34 43
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-34 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-49 42
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-43 42
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-43 42
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-43 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 8e-33 42
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-43 42
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-43 42
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-43 42
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 1e-43 42
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 1e-43 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 6e-33 42
Z5089 NP_290241.1 transposase Not tested LEE Protein 8e-33 42
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 6e-33 42
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-45 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-45 41
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C427_2313 YP_007543770.1 ISEch10 OrfB VFG1484 Protein 7e-36 44
C427_2313 YP_007543770.1 ISEch10 OrfB VFG1631 Protein 9e-50 42
C427_2313 YP_007543770.1 ISEch10 OrfB VFG1122 Protein 8e-44 42
C427_2313 YP_007543770.1 ISEch10 OrfB VFG0785 Protein 3e-33 42