Gene Information

Name : C427_1740 (C427_1740)
Accession : YP_007543197.1
Strain : Glaciecola psychrophila 170
Genome accession: NC_020514
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1640684 - 1641970 bp
Length : 1287 bp
Strand : -
Note : -

DNA sequence : 
ATGTCGTTAAGTTATTTTTGGGTATTTATTTTATTGTTAACCGCCGGTGCACCGGTCATTTTTGCACTGTTAATTGGCCC
CGGTGTCAGCTTAATTTTAGACGGTAAGGAAGTGTTCTTCTCTGCCCTGTTAAATAGGCTTTATTCGGGCATGAATTCTT
TTCCTTTGATGGCGGTACCGTTTTTTATACTTGCTGGCGAACTGATGAATCAGGGTGGTATCACTCAATCTATTGTCCGC
TTTAGTCAAACGTTGATAGGCCACTATCGAGGTGGGTTAGCGCAGGTGAATATTTTATCTTCCGTATTATTTGCTGGTTT
ATCTGGTTCAGCAGTAGCAGACACTTCAGCCCTTGGTAAAATGCTTATTCCCGCCATGGAGCAAAATGGTTATAGCAGAC
GTTTTGCTGCAGCGGTGACTGCCGCGTCATCAGTCATTGGCCCTATTATCCCCCCCTCTGGCATTATGATTTTGTATGCG
TTTATTATGAACGTATCTGTCGCTGGCATGTTTTTGGCCGGTATAGTGCCAGGCATTTTGATTTGCGCGGGTTTGATGTT
AATGACCAGCCATATTGCCAAAAAACGTAATTACCCCATTGCTAATGCAAAAGCCACGTGGCATGAGCGTGGCAGTGCAC
TTAAAAGCTCTTTTTTACCACTGTTAACACCCGTTATTTTGTTGGGCGGCATAGTGCTAGGCGTATTTACCCCCACCGAA
GCCGCCGCAGTAGCAGCAGGTTACGCACTGATTATCACCTTGTTTGTGACACACACTCTCAAATTTAATAAGTTGCCTTC
TATATTAGTCAATGCCGCGGTGCAGTCTGGTACCATTTTATTATTGGTCGGCTCAGCGGTTACTTTTGCTTGGATCATTA
CGGTATCTGGCATGGCCGATACACTCGCCTCAGAAATAATGGGGATCACCGACAATGTGTTGTTACTACTGCTAATCATC
AACTTATTTTTATTTGCCATAGGCATGTTCTTAGATGCAGGACCCGCCATCTTAATTTTAGGCCCTGTACTCGCTCCTAT
ATTTATCACTCTGGGCATAGACCCGTTGCATTTTGCAGTGATCATGTGCGTGAATTTAACGGTGGGGCTGGCCACACCAC
CTATGGGTTTAGTGTTGTTTGTTGCTGCTGCGGTGTCAGGTGAAAAAACTGAAAATATAGCCTTAGAAATGCTGCCATTT
TTAGCAGTAGAGGCAGCAGTCATTTTTTTGATTACTTACTTCCCTGCTCTCACTATGACCTTACCTACGTTTTTTGGATT
CGCTTAA

Protein sequence : 
MSLSYFWVFILLLTAGAPVIFALLIGPGVSLILDGKEVFFSALLNRLYSGMNSFPLMAVPFFILAGELMNQGGITQSIVR
FSQTLIGHYRGGLAQVNILSSVLFAGLSGSAVADTSALGKMLIPAMEQNGYSRRFAAAVTAASSVIGPIIPPSGIMILYA
FIMNVSVAGMFLAGIVPGILICAGLMLMTSHIAKKRNYPIANAKATWHERGSALKSSFLPLLTPVILLGGIVLGVFTPTE
AAAVAAGYALIITLFVTHTLKFNKLPSILVNAAVQSGTILLLVGSAVTFAWIITVSGMADTLASEIMGITDNVLLLLLII
NLFLFAIGMFLDAGPAILILGPVLAPIFITLGIDPLHFAVIMCVNLTVGLATPPMGLVLFVAAAVSGEKTENIALEMLPF
LAVEAAVIFLITYFPALTMTLPTFFGFA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 3e-56 42
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 3e-56 42
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-56 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C427_1740 YP_007543197.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 1e-56 42