Gene Information

Name : lcrD (BN442_0911)
Accession : YP_007540665.1
Strain : Chlamydia trachomatis IU888
Genome accession: NC_020512
Putative virulence/resistance : Virulence
Product : low calcium response protein D (predicted to be part of the TTSS apparatus)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 104101 - 106227 bp
Length : 2127 bp
Strand : -
Note : -

DNA sequence :
ATGAACAAGCTACTCAACTTTGTCAGTAGAACATTCGGGGGAGATGCGGCCCTGAATATGATAAACAAGTCCAGTGACCT
GATCCTCGCCATGTGGATGTTAGGCGTGGTCTTGATGATCATTTTGCCATTGCCTCCAGCTATGGTGGACTTTATGATCA
CCATTAACTTGGCGATCTCTGTGTTCCTGCTGATGGTTGCCTTGTATATTCCCAGCGCATTACAACTTTCTGTTTTCCCC
TCCTTACTCTTAATCACCACAATGTTCCGATTGGGGATTAACATTTCTTCCTCCCGACAAATTCTCCTTCATGCTTATGC
TGGTCACGTGATCCAAGCCTTCGGAGACTTCGTCGTTGGAGGAAACTATGTCGTTGGATTTATTATCTTCCTAATCATCA
CCATCATTCAGTTTATCGTGGTAACAAAAGGTGCGGAGAGGGTCGCTGAGGTAGCTGCTCGATTCCGATTAGATGCCATG
CCTGGTAAACAGATGGCCATCGATGCCGACCTACGAGCAGGAATGATTGATGCGACACAAGCTCGTGATAAGCGATCTCA
GATTCAGAAAGAAAGTGAACTTTATGGAGCTATGGACGGAGCCATGAAGTTCATTAAGGGAGACGTGATCGCAGGGATTG
TTATCTCCTTGATTAACATCGTAGGAGGATTAGTCATCGGAGTGACCATGAAGGGCATGACGATGGCTCAAGCCGCGCAC
ATCTACACGTTGATTACGATCGGTGACGGGTTAGTTTCTCAAATCCCCTCTCTGTTAATCTCTTTAACAGCTGGTATCGT
AACCACTCGAGTATCTAGTGATAAAGACACTAACCTTGGTAAGGAAATTTCTAGCCAGTTGGTTAAAGAACCTCGGGCAC
TTCTCCTATCTGCAGGCGCAACCTTAGGAATCGGATTCTTCAAAGGTTTCCCTTTATGGTCATTTGCTTTAATGGCCGTT
CTCTTTGCAGTATTAGGTATTCTGTTAATCACTAAGAAAAACTCTCCAGGGAAAAAAGGCGGAGCCAGCTCTACTACTAC
AGTAGGTGCCGCTGATGGAGCTGCGGCTTCAGGAGAAAATTCTGATGATTATGCTCTGACTCTTCCTGTAATTCTTGAAC
TTGGAAAAGATCTTTCTAAACTCATCCAACAACGAACCAAATCGGGGCAAAGTTTTGTGGATGATATGATTCCTAAAATG
CGTCAGGCTCTCTATCAGGATATTGGAATTCGTTATCCAGGAATCCATGTACGTACAGACTCCCCTTCCTTGGAAGGTAA
TGACTATATGATTCTGCTGAATGAGGTTCCCTACGTTCGCGGAAAAATTCTACCAAATCATGTGTTAACAAATGAAGTAG
AAGAAAACTTATCTCGGTATAACTTACCTTTTATTACTTACAAAAATGCTGCAGGATTGCCTTCCACTTGGGTTAGTACA
GATGCTCTCACTATCTTAGAGAAAGCTGCGATTAAATACTGGTCTCCTTTGGAAGTGATTATTCTTCACTTGTCCTACTT
CTTCCATAGAAATTCTCAAGAGTTCTTAGGCATTCAGGAAGTACGCTCTATGATTGAATTTATGGAACGTTCCTTCCCTG
ATCTTGTTAAAGAGGTTACCCGTCTTATTCCTCTACAGAAGCTTACAGAAATCTTTAAGCGTTTAGTTCAAGAACAAATA
TCCATTAAGGATTTACGAACTATTTTGGAATCTTTGAGCGAATGGGCACAGACGGAAAAGGATACAGTATTACTTACTGA
ATATGTGCGCTCTTCCTTGAAACTCTATATCAGCTTCAAGTTCTCTCAAGGGCAATCCGCTATTTCTGTATATCTGCTCG
ATCCTGAAATTGAAGAGATGATCCGCGGAGCAATCAAACAAACTTCTGCAGGATCTTATTTGGCTTTAGATCCAGATTCT
GTAAACCTCATCTTAAAATCTATGCGGATGACTATTACTCCTACACCTCCTGGAGGACAGCCTCCTGTGCTGTTGACAGC
AATTGATGTCAGACGCTATGTACGGAAATTGATAGAGACAGAATTCCCTGATATCGCTGTGATTTCTTACCAAGAAGTTT
TACCTGAAATTAGAATCCAGCCTTTGGGAAGAATTCAAATTTTCTAA

Protein sequence :
MNKLLNFVSRTFGGDAALNMINKSSDLILAMWMLGVVLMIILPLPPAMVDFMITINLAISVFLLMVALYIPSALQLSVFP
SLLLITTMFRLGINISSSRQILLHAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM
PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLINIVGGLVIGVTMKGMTMAQAAH
IYTLITIGDGLVSQIPSLLISLTAGIVTTRVSSDKDTNLGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAV
LFAVLGILLITKKNSPGKKGGASSTTTVGAADGAAASGENSDDYALTLPVILELGKDLSKLIQQRTKSGQSFVDDMIPKM
RQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKILPNHVLTNEVEENLSRYNLPFITYKNAAGLPSTWVST
DALTILEKAAIKYWSPLEVIILHLSYFFHRNSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQI
SIKDLRTILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGAIKQTSAGSYLALDPDS
VNLILKSMRMTITPTPPGGQPPVLLTAIDVRRYVRKLIETEFPDIAVISYQEVLPEIRIQPLGRIQIF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssD AAO18050.1 LssD Virulence TTSS locus Protein 4e-140 46
YPO0266 YP_002345347.1 secretion system apparatus protein SsaV Virulence Not named Protein 1e-94 42
escV AFO66414.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-96 41
escV AFO66296.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-96 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lcrD YP_007540665.1 low calcium response protein D (predicted to be part of the TTSS apparatus) VFG2126 Protein 0.0 99
lcrD YP_007540665.1 low calcium response protein D (predicted to be part of the TTSS apparatus) VFG0384 Protein 2e-139 46
lcrD YP_007540665.1 low calcium response protein D (predicted to be part of the TTSS apparatus) VFG0064 Protein 4e-143 46
lcrD YP_007540665.1 low calcium response protein D (predicted to be part of the TTSS apparatus) VFG0198 Protein 2e-129 46