Gene Information

Name : cagM (HPOK310_0795)
Accession : YP_007538429.1
Strain : Helicobacter pylori OK310
Genome accession: NC_020509
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 834372 - 835502 bp
Length : 1131 bp
Strand : -
Note : -

DNA sequence : 
ATGCTTGCAAAAATCGTTTTTAGCTCATTGGTTGCGTTTGGAGTTTTGTCGGCTAATGTGGAGCAGTTTGGTTCATTCTT
CAACGAGATAAAAAAAGAACAAGAAGAAGTGGCTGCAAAAGAAGACGCTCTTAAGGCTCGCAAGAAGCTCTTAAACAATA
CGCATGATTTCTTAGAGGACTTGATTTTTAGAAAACAAAAAATCAAAGAGCTTATGGATCATAGAGCTAAAGTTCTTTCA
GACTTAGAAAACAAATACAAAAAAGAAAAAGAGGCTCTAGAGAAAGAGACAAGAGGTAAAATCCTTACTGCTAAGTCAAA
GGCTTATGGGGATCTAGAGCAAGCTTTAAAAGATAACCCTCTCTATAAGAAACTCCTCCCTAACCCTTATGCCTATGTTT
TAAACCAAGAAACATTCACCAAAGAAGATAAGGAGCGTTTGAGTTATTACTACCCTCAAGTGAAAACGAGCAGTATTTTT
AAAAAAACTACCGCTACCACTAAAGATAAGGCTCAGGCTTTGCTTCAAATGGGTGTGTTTTCTTTAGATGAAGAACAAAA
CAAAAAAGCGAGCCGATTAGCTCTATCTTACAAGCAAGCGATTGAAGAATATTCCAATAACGTTTCTAATTTATTGAGCA
GAAAAGAATTGGATAATATAGATTATTACTTACAGCTTGAAAGAAACAAATTTGACTCCAAAGCAAAAGATATTGCTCAA
AAGGCTACTAACACGCTTATTTTTAACTCGGAACGCTTGGCGTTTAGCATGGCGATTGATAAGATCAATGAGAAATACTT
AAGGGGCTATGAGGCTTTTTCTAACTTGTTGAAAAATGTCAAAGATGATGTGGAATTGAATACTCTGACTAAAAACTTTA
CCAATCAAAAATTGAGTTTCGCTCAAAAACAAAAATTGTGTTTGTTGGTTTTAGACAGCTTCAATTTTGATACCCAATCC
AAAAAATCTATCTTAAAAAAGACTAATGAATACAATATTTTCGTAGATAGCGATCCTATGATGCATGACAAAACCACTAT
GCAAAAAGAACACTACAAGATATTTAATTTCTTCAAAACAGTGGTTTCTGCATACCGAAACAATGTTGCCAAGAATAATC
CCTTTGAATAG

Protein sequence : 
MLAKIVFSSLVAFGVLSANVEQFGSFFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLIFRKQKIKELMDHRAKVLS
DLENKYKKEKEALEKETRGKILTAKSKAYGDLEQALKDNPLYKKLLPNPYAYVLNQETFTKEDKERLSYYYPQVKTSSIF
KKTTATTKDKAQALLQMGVFSLDEEQNKKASRLALSYKQAIEEYSNNVSNLLSRKELDNIDYYLQLERNKFDSKAKDIAQ
KATNTLIFNSERLAFSMAIDKINEKYLRGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQS
KKSILKKTNEYNIFVDSDPMMHDKTTMQKEHYKIFNFFKTVVSAYRNNVAKNNPFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag16 AAR03929.1 Cag16 Virulence cag PAI Protein 2e-151 99
cag16 AAR03960.1 Cag16 Virulence cag PAI Protein 2e-149 99
cagM YP_005779056.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-150 99
cag16 AAR03871.1 Cag16 Virulence cag PAI Protein 1e-151 99
HP0537 BAD13870.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-150 99
cagM YP_005774534.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-150 99
cagM AGC69800.1 cag pathogenicity island protein M Virulence cag PAI Protein 8e-152 99
HP0537 BAD13789.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-150 99
cagM YP_003728727.1 cag pathogenicity island protein M Virulence cag PAI Protein 1e-151 99
cagM AAC44695.1 CagM Virulence cag PAI Protein 7e-152 99
HP0537 BAD13953.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-150 99
HP0537 NP_207333.1 cag pathogenicity island protein (cag16) Virulence cag PAI Protein 7e-152 99
cag16 AAR03899.1 Cag16 Virulence cag PAI Protein 7e-152 99
HP0537 BAD13843.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-150 99
HP0537 BAD13898.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-150 99
cagM NP_223203.1 cag island protein Virulence cag PAI Protein 4e-149 99
HP0537 BAD14035.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-150 99
HP0537 BAD13980.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-151 99
cagM YP_005775737.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-150 99
cagM YP_005777278.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-149 98
HP0537 BAD13925.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-149 98
HP0537 BAD14008.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-147 97
HP0537 BAD13816.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-148 97
HP0537 BAD14062.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-141 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagM YP_007538429.1 cag pathogenicity island protein VFG0296 Protein 3e-152 99