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Name : lysS (HPOK310_0188) Accession : YP_007537822.1 Strain : Helicobacter pylori OK310 Genome accession: NC_020509 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : - Position : 190795 - 192300 bp Length : 1506 bp Strand : + Note : - DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAACAGCTTGAGAGAAGAAGGGAAAAACCCTTATAAAAA TGGCTTAAAACGAAGCCTTACAAACGCCGCTTTTTTAGAAAAATACGCCTATGTTAAGGATTTAGAAGAGCCTAAAGACA AGGAAAAATGCGAGAGTATTGTAGGGAGGGTCAAGCTTTTGCGCTTAATGGGTAAGGCATGTTTTATTAAAATTGAAGAT GAAAGCGCGATTTTGCAAGCTTATGTTTCGCAAAATGAATTGAACGATGAATTTAAAAGCCTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGTTTTCCTTTTGCTACCAAAACCGGTGAATTAAGCGTTCATGCACTAGAATTTCATA TTTTAAGCAAAACCATTGTGCCTTTGCCTGAAAAATTCCATGGACTGAGCGATATAGAATTGCGTTACCGCCAGCGCTAC TTGGATTTGATAGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAACGCAGTTTGATTGTTTCTAGCGTGCGGAAATTCTT TGAAACGGAAGGGTTTTTAGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTTATCA CTTACCATAACGCTTTAGAAATTGAAAGGTATTTAAGAATCGCTCCAGAATTATACCTCAAACGCTTGATTGTGGGGGGT TTTGAAGCGGTGTTTGAAATCAATCGTAATTTCAGGAATGAGGGCATGGATCACAGCCATAATCCCGAATTTACGATGAT TGAGTTTTATTGGGCATATCACACTTATGAAGATTTGATCGAACTCAGTAAGAGGTTATTTGACTACTTGCTGAAAACTT TGAACTTACCTTCAAAAATCATTTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCCTATTTGGACGCT TTAGAAACAATAGGGGGCATTAGTAAGGATATTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCAAGGCAT TAAAGTAGAGCCAAATCTCACTTATGGTAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCACCAACTCATTAACC CCACTTTTGTAACCCAATACCCCATTGAGATTAGCCCCCTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATTGCAGGGAAAGAAATCGCTAACGGCTTTAGCGAGTTGAACGATCCTTTAGATCAATTAGAACGCTT TAAAAATCAAGTGGCTGAGAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTATGTGTGGGCGTTAGCCC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGACCGATTAGTGATGCTACTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTGGAGAGTGAAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKDLEEPKDKEKCESIVGRVKLLRLMGKACFIKIED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFETEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLPSKIIYNDMEVDFNQTSVISYLDA LETIGGISKDILEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFDHFVEHQLINPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVESEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-106 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_007537822.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-106 | 50 |
