Gene Information

Name : cagD (HPOK113_0563)
Accession : YP_007536677.1
Strain : Helicobacter pylori OK113
Genome accession: NC_020508
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 595822 - 596445 bp
Length : 624 bp
Strand : -
Note : -

DNA sequence : 
TTGATCAACAATAATAGTAATAAAAAAATAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTATCGTTGTTTTCAGTTCGTA
TGGGTCAGCAAATGACGATAATCAAGCCAAAAAAGAAGTGCAAGAAAAAGAAAAAAACACTCCCAATGGGCTTGTTTATA
CGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTACAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCC
GATATTATCAAAGATGAAGTTTTTGACTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA
TCCAATCATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGACTGAATGTAGAATTACAGATCAATCCTGAAGTAA
AAGACTTTTTTACTTTTAAAAGCATCAGCACGACCAATAAACAACGCTGCTTTCTGTCATTGCGCGGAGAAACAAGAGAA
ATTTTATGCGATGATAAGCTATATAATGTTTTATTGGCCGTATTCAATTCTTATGACCCTAATGATCTTTTGAAACATAT
TAGCACCATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MINNNSNKKIRDFFLKVLLSIVVFSSYGSANDDNQAKKEVQEKEKNTPNGLVYTNLDFDSFKATIKNLQDKKVTFKEVNP
DIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETRE
ILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-89 99
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-86 97
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-88 97
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-87 97
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 3e-87 97
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-87 96
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-86 96
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-86 96
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 2e-87 96
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-86 96
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-87 96
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-86 96
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-88 96
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-86 96
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 3e-88 96
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-87 96
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-88 96
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-87 96
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 2e-86 96
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 1e-86 95
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 2e-84 95
cagD AAF80210.1 CagD Virulence cag PAI Protein 4e-85 95
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 9e-86 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagD YP_007536677.1 cag pathogenicity island protein VFG0304 Protein 4e-87 95