Gene Information

Name : cagW (HPOK113_0550)
Accession : YP_007536664.1
Strain : Helicobacter pylori OK113
Genome accession: NC_020508
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 578818 - 580425 bp
Length : 1608 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAATATTAAAAGGACTTTTTTAATAACAATCATGAGTTTTTTTCTCATTGTTCCTAATTGGTTGAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTGACAGGCTATGCATCTATTGGTGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA
GCACTTAGCACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTGGTGAAATATTTGAATACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACGCCATCAAGTGGCTGTAATTTTGGTTGGAATG
CATTGATAAATAAAAACATAGATGTATCCATGGATAGCATGCTAGACAATTTGAGCAACAAGATTCGAAATTTTACCAAA
GGCGGTATTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTAGCTCAATAACTGCTCAAGCTTCTACGAATAT
TACAGCTGATGGTTTAATTTGGCTGATTGGTAAAGAATTCACCGCAAATAAACTGCAAAACAACGCTACAGCCATGCTTG
CTTTTGCCGCACTGGAATCTGTTGTCAAAGGAGCGGATGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTTATTTC
TTTTATGAAATTGAGAGATATTTCAAGTAACATTCAGATCAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGTGCTTTTGGGTTGAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCAGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTGGCAGGTA
TTTCTTTATTCGCTATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGG
GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT
GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTAGCAT
TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGACTGGGTATCGATTCAACTATTGCGAGT
CTCATCACTCTATTTATTTTAAAAGGTTTCATAGAAACGATTATTGAGAGTGTCAATGCGATCGTTAATACCATTTTCAG
CTCTGTATCTATGGATGGTAGCAGAATGGATAGAGAAAGAGATGCCTTAATGATTGGAAGAGTTGGTGGATCTATGTTTA
AAGGATAA

Protein sequence : 
MFNIKRTFLITIMSFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYASIGASGSGKSSGQGVIE
ALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSMLDNLSNKIRNFTK
GGIEDNVKGNVLLQIISSITAQASTNITADGLIWLIGKEFTANKLQNNATAMLAFAALESVVKGADAAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISSNIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS
LITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMIGRVGGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 99
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 98
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 98
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 98
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagW YP_007536664.1 cag pathogenicity island protein VFG0289 Protein 0.0 98