Gene Information

Name : cag4 (HPOK113_0544)
Accession : YP_007536658.1
Strain : Helicobacter pylori OK113
Genome accession: NC_020508
Putative virulence/resistance : Virulence
Product : peptidoglycan hydrolase, Cag island protein (caggamma)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 566813 - 567322 bp
Length : 510 bp
Strand : +
Note : -

DNA sequence : 
TTGTTTGAGAAATGGATTGGTCTCTTTTTACTTCTTAATTCCTTAGCCTATCCATGCCAAAAAGTAACCATTAGTTTCAA
GCAGTATGAGAATCTTGTCCATATTCACCAAAAAGGTTGCGACAATGAAGTGGTGTGCAGAACGCTCATCTCTATCGCTT
TATTGGAAAGTTCTTTAGGGTTGAACAACAAGCGCGAAATTTCCCTAAAAGACACTTCCTATTCCATGTTTCACATCACT
TTGAACACCGCTAAAAAATTCTACCCCACCTATTCTAAAACGCTCCTCAAATACAAATTGCTCAATGATGTGGATTTTGC
GATTTCATTGGCTAAACAAATTTTGAAAGAAAATTTTGATTATTACAAACAAAAACACCCTAGTAAAAGCGTGTATCAAT
TAGTAGAAATGGCAGTAGGCGCTTACAATGGGGGTATGAAACATAACCCTAATGGTGCTTATGTGAAAAAGTTCCGCTGT
GTTTATTCTCAGGTGCGCTACAACGAGTAG

Protein sequence : 
MFEKWIGLFLLLNSLAYPCQKVTISFKQYENLVHIHQKGCDNEVVCRTLISIALLESSLGLNNKREISLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKYKLLNDVDFAISLAKQILKENFDYYKQKHPSKSVYQLVEMAVGAYNGGMKHNPNGAYVKKFRC
VYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-67 98
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-67 98
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 2e-67 98
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-67 98
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-68 98
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 1e-67 97
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-67 96
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 4e-67 96
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-66 95
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-66 95
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 7e-66 95
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 1e-65 95
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-66 94
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 5e-65 94
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 2e-65 94
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-46 94
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 2e-61 93
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-65 93
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 5e-60 92
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 4e-63 92
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 2e-63 92
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 4e-63 92
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 1e-63 92
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-64 92

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag4 YP_007536658.1 peptidoglycan hydrolase, Cag island protein (caggamma) VFG0283 Protein 1e-65 94