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Name : S58_72220 (S58_72220) Accession : YP_007516773.1 Strain : Bradyrhizobium oligotrophicum S58 Genome accession: NC_020453 Putative virulence/resistance : Virulence Product : type III secretion system ATPase Function : - COG functional category : - COG ID : - EC number : - Position : 8197743 - 8199086 bp Length : 1344 bp Strand : - Note : - DNA sequence : ATGTCGGCAGGCTCTGCCACCCACCGACTCGCGCGAATCCTGCCGCAGTTGCGTAGAGCTGCAGCCAGTTCGCAACTGCG GCCGATCCGCGGGCGCGTGATTCAGGTGTCGGGGACCCTCATCAGGGCGATCGTTCCCGACGCGCGCGTTGGCGATATCT GTTTGCTCCGCTCTGCCCACGCCTCGGATGATCTGCGGGCCGAGATCGTGGGCATCGAAGGCGGGGTCGCCTTGCTGACC CCCCTCGGAGACGTGGCGGGTCTCTCAGCAAGGACGGAAGTCGTTTCGACCAGGCAGGCCCTCGGCATCATGGTTGGGCC AGCGCTGCTCGGCCGCGTCGTCGACGGGCTCGGGCGCCTTCTCGACGTTCAGGAACGAGGATGGCCCGAGTTCGACCAGG TTCGAGGAGTCCGCGGAGCCGCGCCGGCGCCCTTGGCCCGGCGGCTCGTTGGCCGCCCATTATCCCTTGGCATCCGGGCG ATCGATGGTCTGCTCAGTTGTGGCGAGGGGCAGCGGATTGGCATCTATGGCGAACCCGGTGCAGGCAAATCGTCGCTCGT CGCCCAGATCGTCCAGAACGCCGACGTCGATGTCTGCGTGGTTGCGCTGATCGGCGAGCGTGGTCGCGAAGTCCGAGAGA TGGTCGAGCGCTGCCTCGCCGGAGCGGCCCGGGCGCGATCGGTCGTCATCGTCGCAACGTCGGACCGCCCGCCGACGGAA CGCGTCACGGCTGCCTACGTCGCCACGACGATTGCCGAGTACTTCCGGGATCGCAACGCGCGCGTGCTGCTGGTGCAGGA CAGCGTCACACGCTTTGCGCGGGCATTGCGCGAGATCGGACTGGCGGCGGGCGAACCTCCGACGCGCCGGGGCTTTCCGC CGTCGGTGTTTGCGGCCTTGCCCGAGTTGCTCGAGCGGTCCGGCCCCGGAGTCACCGGCTCAATCACTGCATTCTACACC GTGCTGGTTGAGGGAGATGGTACCGCGGATCCGATCGCTGAGGAGACGCGCAGCATTCTGGACGGACACATCGCGTTGTC ACCTAAGCTCGCACAGTCGGCGCATTTCCCGGCGATTGACATCGTGTCCAGCCTCAGCCGCGTCATGGACCAAATCGTGA CGAGCCGCCATCGCGCTGCAGCGATGAGGGTGCGTGAACTCATAGCTCGCTATGCGGAGCTCGAGTTCCTGCTGCAGGTT GGCGAGTACAAGGCCGGATCCGATCCGATCGCCGACGAGGCGATCGCCAAGCAGGAGGCTATCAAGTCCTTTCTGCGGCA GGGCCTCGGCGAGGCCGTTCCGTGGGATCGCACGATCCAGCAACTCGAGCAGCTCGCGTCATGA Protein sequence : MSAGSATHRLARILPQLRRAAASSQLRPIRGRVIQVSGTLIRAIVPDARVGDICLLRSAHASDDLRAEIVGIEGGVALLT PLGDVAGLSARTEVVSTRQALGIMVGPALLGRVVDGLGRLLDVQERGWPEFDQVRGVRGAAPAPLARRLVGRPLSLGIRA IDGLLSCGEGQRIGIYGEPGAGKSSLVAQIVQNADVDVCVVALIGERGREVREMVERCLAGAARARSVVIVATSDRPPTE RVTAAYVATTIAEYFRDRNARVLLVQDSVTRFARALREIGLAAGEPPTRRGFPPSVFAALPELLERSGPGVTGSITAFYT VLVEGDGTADPIAEETRSILDGHIALSPKLAQSAHFPAIDIVSSLSRVMDQIVTSRHRAAAMRVRELIARYAELEFLLQV GEYKAGSDPIADEAIAKQEAIKSFLRQGLGEAVPWDRTIQQLEQLAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcN | YP_362163.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 3e-80 | 53 |
| hrcN | NP_640767.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 8e-81 | 53 |
| hrpB6 | AAB08461.1 | HrpB6 | Virulence | Hrp PAI | Protein | 2e-80 | 53 |
| hrcN | YP_198730.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 6e-81 | 53 |
| hrpB6 | BAB07852.1 | HrpB6 | Virulence | Hrp PAI | Protein | 5e-81 | 53 |
| hrpB6 | AAF61281.1 | HrpB6 | Virulence | Hrp PAI | Protein | 5e-81 | 53 |
| hrcN | AAP34339.1 | HrcN | Virulence | Hrp PAI | Protein | 1e-81 | 53 |
| XC_3006 | YP_244074.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 8e-80 | 53 |
| hrcN | NP_636610.1 | type III secretion system ATPase | Virulence | Hrp PAI | Protein | 8e-80 | 53 |
| lscN | AAO18044.1 | LscN | Virulence | TTSS locus | Protein | 2e-92 | 52 |
| ssaN | YP_216423.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 4e-69 | 48 |
| YPO0267 | YP_002345348.1 | type III secretion system ATPase | Virulence | Not named | Protein | 2e-72 | 47 |
| ssaN | CAA70537.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 8e-69 | 47 |
| ssaN | NP_460380.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 1e-68 | 47 |
| ssaN | NP_456113.1 | putative type III secretion ATP synthase | Virulence | SPI-2 | Protein | 1e-68 | 46 |
| ssaN | NP_805086.1 | type III secretion system ATPase | Virulence | SPI-2 | Protein | 1e-68 | 46 |
| hrcN | AAR25633.1 | type III secretion cytoplasmic ATPase HrcN | Not tested | Not named | Protein | 9e-55 | 45 |
| hrcN | AAT96299.1 | HrcN | Virulence | S-PAI | Protein | 5e-62 | 45 |
| hrcN | AAT96339.1 | HrcN | Virulence | S-PAI | Protein | 2e-62 | 45 |
| hrcN | AAT96258.1 | HrcN | Virulence | S-PAI | Protein | 1e-62 | 45 |
| hrcN | AAB06001.1 | HrcN | Virulence | Hrp PAI | Protein | 6e-62 | 44 |
| invC | AAS66861.1 | InvC | Not tested | SSR-2 | Protein | 7e-63 | 43 |
| ECs3730 | NP_311757.1 | ATP synthase SpaL | Not tested | LIM | Protein | 1e-64 | 42 |
| invC | YP_217813.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 1e-61 | 41 |
| spaI | NP_457288.1 | secretory apparatus ATP synthase (associated with virulence) | Virulence | SPI-1 | Protein | 1e-61 | 41 |
| spaI | NP_806497.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 1e-61 | 41 |
| invC | NP_461815.1 | ATP synthase SpaL | Virulence | SPI-1 | Protein | 1e-61 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| S58_72220 | YP_007516773.1 | type III secretion system ATPase | VFG0048 | Protein | 6e-92 | 56 |
| S58_72220 | YP_007516773.1 | type III secretion system ATPase | VFG0390 | Protein | 2e-91 | 52 |
| S58_72220 | YP_007516773.1 | type III secretion system ATPase | VFG0192 | Protein | 7e-90 | 52 |
| S58_72220 | YP_007516773.1 | type III secretion system ATPase | VFG2144 | Protein | 1e-80 | 49 |
| S58_72220 | YP_007516773.1 | type III secretion system ATPase | VFG0515 | Protein | 5e-69 | 47 |
| S58_72220 | YP_007516773.1 | type III secretion system ATPase | VFG1254 | Protein | 1e-57 | 43 |
| S58_72220 | YP_007516773.1 | type III secretion system ATPase | VFG1778 | Protein | 5e-66 | 43 |
| S58_72220 | YP_007516773.1 | type III secretion system ATPase | VFG0555 | Protein | 5e-62 | 41 |
