Gene Information

Name : S58_72190 (S58_72190)
Accession : YP_007516770.1
Strain : Bradyrhizobium oligotrophicum S58
Genome accession: NC_020453
Putative virulence/resistance : Virulence
Product : type III secretion system protein YscR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 8195540 - 8196187 bp
Length : 648 bp
Strand : -
Note : -

DNA sequence : 
GTGACCCAGTTCAACCTGTTTGCCGTTCTTGCGGTCATCGCCGGACTTGGCCTTGTCACCTTTGCCGTCGTGACGATGAC
ATCGTTCGTCAAGATCGCCGTGGTGCTGTTCCTGATCCGGAATGCGCTGGGAGTGCAGCAGACGCCTCCGAACCTCGTGC
TCTATGCCATTGCCTTGGTTCTGACGGCCTATGTCAGCGCACCGCTGGTGCAGGCAGTGTACGAGCGCGTCAATGATCGG
GCCACCGAGTTTCAAACCTTTGCCGACTGGAAAGATGCCGCAGAGCGGGCAACCCAGCCAGTTCGCGAGCATTTGAGCCG
GTTCACCACGGTCGCGGAGCGGGATTTCTTCGTCACCGCCACCGGCAGCTTATGGCCCGACAGCAGCAGGGCCAAGCTAT
CCAGTGAAGACCTCGTCATTCTCGTTCCCTCGTTCATGAGCTCGGAGCTCAAGCGCGCCTTCGAGATCGGCTTCCTGCTC
TATCTCCCCTTCATCGCGATTGATCTCGTGGTGTCCGCGGTCTTGATGTCCCTTGGCATGTCGATGGTGCCGCCGTCGAC
GATCTCCGTTCCATTCAAGCTGTTCTTGTTCGTCATGGTCGAGGGTTGGTCCAAGCTGATGCATGGCTTGGTGCTGAGTT
ATGGGTAG

Protein sequence : 
MTQFNLFAVLAVIAGLGLVTFAVVTMTSFVKIAVVLFLIRNALGVQQTPPNLVLYAIALVLTAYVSAPLVQAVYERVNDR
ATEFQTFADWKDAAERATQPVREHLSRFTTVAERDFFVTATGSLWPDSSRAKLSSEDLVILVPSFMSSELKRAFEIGFLL
YLPFIAIDLVVSAVLMSLGMSMVPPSTISVPFKLFLFVMVEGWSKLMHGLVLSYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-44 50
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 7e-41 46
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-41 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-41 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-41 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-41 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-41 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-41 45
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-40 45
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-40 45
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-40 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-41 45
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-35 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-36 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-41 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-37 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-35 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-35 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-33 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-33 41
escR AAK26700.1 EscR Virulence LEE Protein 2e-35 41
escR AAL57527.1 EscR Virulence LEE Protein 2e-35 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-35 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-35 41
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-35 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-35 41
escR AAC31528.1 L0049 Virulence LEE Protein 2e-35 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-35 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-35 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-35 41
escR AAC38369.1 EscR Virulence LEE Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S58_72190 YP_007516770.1 type III secretion system protein YscR VFG0044 Protein 2e-47 51
S58_72190 YP_007516770.1 type III secretion system protein YscR VFG0394 Protein 2e-41 49
S58_72190 YP_007516770.1 type III secretion system protein YscR VFG0188 Protein 5e-43 48
S58_72190 YP_007516770.1 type III secretion system protein YscR VFG2338 Protein 1e-30 41
S58_72190 YP_007516770.1 type III secretion system protein YscR VFG0715 Protein 6e-36 41
S58_72190 YP_007516770.1 type III secretion system protein YscR VFG0827 Protein 8e-36 41