Gene Information

Name : S58_31180 (S58_31180)
Accession : YP_007512704.1
Strain : Bradyrhizobium oligotrophicum S58
Genome accession: NC_020453
Putative virulence/resistance : Virulence
Product : putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3538825 - 3540183 bp
Length : 1359 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAACCATCCTGATCGTCGACGACGACGCCGCGCTGCGCGACGGCCTCGCAGAAACGATAACCGATCTCGGTCACGA
CGCGCTCACGGCTGCCTCGGGCCGCGAGGCGATCGGCATGGTGTCGGGCGCTATCGACGCCATCCTCCTCGATCTGCGCA
TGCCCGGGATCGACGGCATCGAGACCTTGCGCCGCCTGCGCGCCGACGGCGATGCGCCGCCCGTGATCGTGCTGACGGCG
TATGCGAGCCCGGAGAACACGATCCAGGCCATGCGCCTCGGCGCCTTCGACCATCTGGTCAAGCCGATCGGACGCGACGC
GCTGCGCGAGCTGATCGCGCGGTTGCCGCCGCGCCGGCACCCGCAGCAGGACCATCACAGCCCTGATGAAAGCGGGCTGA
TCGGCACCAGCGAGGCGATGCGCCGCGTGCAGAAGACCATCGGACTTGCCGCCGACGCCGACGCGACCGTGCTGATCCGC
GGCGAGACCGGCACCGGCAAGGAGCTGGTGGCACGCGCGCTCCATGTCCATAGCCTGCGCAACACTAGTCCCTTCGTTGC
CGTGAACTGCGCCGCAATTCCGCAGGATCTGCTCGAAAGCGAGCTGTTCGGCCATGTGAAGGGATCGTTCACCGGCGCGA
CCTCGGACCGGTCAGGCGCGTTTCGCGACGCCGGCAGCGGCACCCTCTTTCTCGACGAGATCGGCGACATGCCGCTCGCG
ATGCAGGCCAAGATCCTGCGCGCGCTGCAGGAGCGCGTGATCACGCCGGTGGGCGGCAAGCCTGTGAAGGTTGCGGCCCG
CGTCGTCGCCGCGACGCATCGCGATCTCGCCAGGCTGGTTGCCAGCGGCGCGTTCCGCGAGGATCTCTACTACCGCCTGA
ACGTGATCCCGATCGAGCTGCCGTCGCTGCGCGAGCGATCCCAGGACATCCTGCCGCTGGCCAGCCATTTTCTCGCGCTG
GCCTCGGAGGGCCGGCCGCGGCCACGGCTGAGCGAGGCGGCCGCCGACAAGCTGGTTCGTGCCCCGTGGCCGGGCAACGT
CCGCGAGCTGCGCAACGTGATCGAACGCGCCTGCGTGCTGACCCGCGGCTCGCTGATCGATGCTGACGACATCGATATCA
CCGCGACGGGACCCGACAACACGGCGGAGCCCTCGACCGACCTGCCAACGGCAGTGGCAAGGCTGGAGGAACGGATGATC
CGACGCGCACTCGACGCCTGCGCCGGCAACCGCTCCGAAGCCGCGCGCCGGCTCAACATCAACCGGCAGCTGCTCTACAC
CAAGATGCAGCGCTACGGGCTTGGTGAGGACCCCGCGTCAGGAAACCTGACACGCGCCGTCGGCAAAGACGACGCCTAG

Protein sequence : 
MATILIVDDDAALRDGLAETITDLGHDALTAASGREAIGMVSGAIDAILLDLRMPGIDGIETLRRLRADGDAPPVIVLTA
YASPENTIQAMRLGAFDHLVKPIGRDALRELIARLPPRRHPQQDHHSPDESGLIGTSEAMRRVQKTIGLAADADATVLIR
GETGTGKELVARALHVHSLRNTSPFVAVNCAAIPQDLLESELFGHVKGSFTGATSDRSGAFRDAGSGTLFLDEIGDMPLA
MQAKILRALQERVITPVGGKPVKVAARVVAATHRDLARLVASGAFREDLYYRLNVIPIELPSLRERSQDILPLASHFLAL
ASEGRPRPRLSEAAADKLVRAPWPGNVRELRNVIERACVLTRGSLIDADDIDITATGPDNTAEPSTDLPTAVARLEERMI
RRALDACAGNRSEAARRLNINRQLLYTKMQRYGLGEDPASGNLTRAVGKDDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-59 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-59 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S58_31180 YP_007512704.1 putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator BAC0467 Protein 8e-74 44
S58_31180 YP_007512704.1 putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator BAC0089 Protein 8e-64 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S58_31180 YP_007512704.1 putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator VFG1249 Protein 9e-65 45
S58_31180 YP_007512704.1 putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator VFG1214 Protein 3e-67 41