Gene Information

Name : S58_30420 (S58_30420)
Accession : YP_007512629.1
Strain : Bradyrhizobium oligotrophicum S58
Genome accession: NC_020453
Putative virulence/resistance : Resistance
Product : beta-lactamase (OXA-5), class D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3449864 - 3450682 bp
Length : 819 bp
Strand : +
Note : -

DNA sequence :
ATGCCCCCGATCAGCCGCCGCCATGCGCTTGCCCTGATGGCCGGCGCCAGCCTGGTGCCCGCACGCGTAGCAGCGCATGT
CGCCCCGCCACGCAACGAGGTCCGTGGCGATCTCGTCAAGCGCTTCACCGACGAGGGCACCAACGGCACGTTCCTCGCCT
ACAAGGTCGAGGAGTATCTGATCATCGCGAGCGACACCGAGCGCTCCGGCGAGGGCCGGCTGCCGGCCTCGACCTTCAAG
ATCGCGAACTCGCTGATCGCGCTGGAGACCGGCGTCGTCCAGGATCCCGACAAGGACGTCTTCAAGTGGGACGGCGTCAC
GAGGTCGATCGAGGCCTGGAACAAGGATCACACCTTGCGCAGTGCGATCGCAGTGTCGGCCGTGCCGGTCTATCAGGAGA
TCGCGCGCCGCATCGGGCCTGAGCGCATGCAGAGATATCTCGAGGAGCTCGATTACGGCAATCACGACATCGGCGGCGGC
ATCGACCAGTTCTGGCTCACCGGCGCGCTTCGCATCGATCCGGTGGAGCAGGTCGATTTCATCGACCGTCTCAGGCGCGG
CGCGCTGCCGGTGTCGAAGCGCAGCCAGGATCTGACGCGCGACATCATTCCGGTGACCAAGGTCGGCGACGCCGTCATTC
ATGCGAAATCGGGATTGCTCGGCAAGGAGCAGGGCTCGCTCGGCTGGATGGTCGGCTGGGTCGACAAAGCAGATCAGCCG
ACCGTGTTCGCGCTCAACATGGATTGCCCGGAGCCGCGTCACGTGGAGGACCGCATGACGCTGACACAAGCGTGCTTGAA
AGACATCGGCGCGTTATAA

Protein sequence :
MPPISRRHALALMAGASLVPARVAAHVAPPRNEVRGDLVKRFTDEGTNGTFLAYKVEEYLIIASDTERSGEGRLPASTFK
IANSLIALETGVVQDPDKDVFKWDGVTRSIEAWNKDHTLRSAIAVSAVPVYQEIARRIGPERMQRYLEELDYGNHDIGGG
IDQFWLTGALRIDPVEQVDFIDRLRRGALPVSKRSQDLTRDIIPVTKVGDAVIHAKSGLLGKEQGSLGWMVGWVDKADQP
TVFALNMDCPEPRHVEDRMTLTQACLKDIGAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 3e-44 44
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 3e-46 43
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 3e-46 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D U37105.2.gene2.p01 Protein 2e-44 44
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D NC_010410.6002874.p0 Protein 2e-44 44
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D HQ700343.1.gene1.p01 Protein 4e-42 43
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D AY500137.1.gene1.p01 Protein 3e-43 43
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D HM015773.1.gene6.p01 Protein 1e-43 43
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D JN205800.1.gene6.p01 Protein 2e-43 43
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D X58272.1.gene1.p01 Protein 1e-45 43
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D AM932669.1.gene2.p01 Protein 2e-46 43
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D AJ854182.1.gene1.p01 Protein 4e-44 43
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D Z22590.1.gene1.p01 Protein 7e-44 43
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D AY306130.1.gene1.p01 Protein 1e-36 42
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D X75562.1.gene1.p01 Protein 3e-44 42
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D AY343493.1.gene1.p01 Protein 2e-41 42
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D U59183.1.gene3.p01 Protein 3e-44 41
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D AM412777.1.gene1.p01 Protein 2e-44 41
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D AF231133.1.gene3.p01 Protein 8e-42 41
S58_30420 YP_007512629.1 beta-lactamase (OXA-5), class D AY445080.1.gene1.p01 Protein 3e-44 41