Gene Information

Name : S58_17270 (S58_17270)
Accession : YP_007511321.1
Strain : Bradyrhizobium oligotrophicum S58
Genome accession: NC_020453
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1980803 - 1982125 bp
Length : 1323 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGGCGCTGGCCGAGCAGATCAACGATATCGACGCCGTCAACACCTATGGGCGGGTGGTCGGCGTGAAGGGACTCAT
GGTGGAGATCGCCGGGCCCATCCATGCGATGTCGGTCGGCGCGCGCATCGTGGTCGAGACCGGCAATAATTACATCCCCG
CCGAAGTGATAGGTTTTTCCGGCAAGAATGCCGTGGTGATGCCGTTCGCCGGGCTGGAGGGCGTGCGGCGCGGCTGCCGC
GCGGTCATCGCCAACGCGGCCAATCAGGTGCGGCCGTCACAGGCCTGGCTCGGCCGCGTCATCAATGCGATGGGCGAGCC
GATCGACGGCAAGGGGCCGCTGCCGCAGGGCGCCTCGCCGGTTCCCTATCGGAACAATCCGCCGCCGGCGCATTCGCGCC
GCCGCGTTGGTTCGCCGCTCGATCTCGGGGTGCGCGCACTGAACACCTTTCTCACCTGCTGCCGCGGCCAGCGGCTCGGC
ATCTTCGCCGGCTCCGGCGTCGGCAAATCGGTGCTGCTGTCGATGCTGGCGCGCAACGTCGATGCGGCGGTGTCGGTGAT
CGGACTGATCGGCGAGCGCGGCCGCGAGGTGCAGGAGTTCCTGCAGGACGATCTCGGTGACGAGGGCCTCGCGCGCTCGG
TCGTCGTGGTCGCGACCTCGGACGAGCCGGCGCTGATGCGACGGCAGGCGGCGTATCTCACGCTCGCGATCTCGGAATAT
TTCCGTGACGAGGGCAAGGACGTGCTTTGTCTGATGGACTCGGTGACGCGCTTTGCGATGGCGCAGCGCGAGATCGGGCT
GTCGGCCGGCGAGCCGCCGACCGCCAAGGGCTACACGCCGACGGTGTTCACCGAGCTGCCGAAACTGCTCGAGCGCGCCG
GTCCGGGCAGCGGCGACGGCACTATCACCGGGATCTTCACCGTGCTGGTCGATGGCGACGATCACAACGAGCCGGTGGCG
GATGCGGTGCGCGGCATTCTCGACGGCCACGTCGTGATGCAGCGTTCAATCGCCGAACGCGGCCGCTATCCGGCGATCAA
CGTCCTCAAATCCGTGTCGCGGACGATGCCGAAATCGGCCGACCCCGTATTCCTACCGACGATCATGCGCGCGCGTCAGG
TGATGGCGACCTACGCCGACATGGAGGAGCTGATCCGGCTCGGCGCCTATCGCGCCGGCTCAAGTCCGGAGGTGGACGAG
GCCATCCGGCTGCACGAGCCGCTGGAGGCGTTCCTCCGTCAGCGCAAGGACGAGGTCTCCAGCCTTCATGACGGGTATCG
CGAGCTGGAACAGATCCTGGGGCGCTTGGAAACGGAAAGCTAA

Protein sequence : 
MKALAEQINDIDAVNTYGRVVGVKGLMVEIAGPIHAMSVGARIVVETGNNYIPAEVIGFSGKNAVVMPFAGLEGVRRGCR
AVIANAANQVRPSQAWLGRVINAMGEPIDGKGPLPQGASPVPYRNNPPPAHSRRRVGSPLDLGVRALNTFLTCCRGQRLG
IFAGSGVGKSVLLSMLARNVDAAVSVIGLIGERGREVQEFLQDDLGDEGLARSVVVVATSDEPALMRRQAAYLTLAISEY
FRDEGKDVLCLMDSVTRFAMAQREIGLSAGEPPTAKGYTPTVFTELPKLLERAGPGSGDGTITGIFTVLVDGDDHNEPVA
DAVRGILDGHVVMQRSIAERGRYPAINVLKSVSRTMPKSADPVFLPTIMRARQVMATYADMEELIRLGAYRAGSSPEVDE
AIRLHEPLEAFLRQRKDEVSSLHDGYRELEQILGRLETES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-74 47
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-73 47
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 7e-73 47
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-73 47
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-73 47
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-83 46
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 45
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-79 45
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-80 45
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 2e-80 45
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-72 45
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-80 44
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-81 44
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-81 44
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-81 44
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-81 44
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-73 44
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-73 44
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 7e-73 44
escN NP_290268.1 hypothetical protein Virulence LEE Protein 9e-73 44
ECs4568 NP_312595.1 EscN Virulence LEE Protein 9e-73 44
escN AAC38383.1 EscN Virulence LEE Protein 1e-72 44
escN AAC31513.1 L0034 Virulence LEE Protein 7e-73 44
escN YP_003236088.1 translocator EscN Virulence LEE Protein 4e-73 43
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-72 43
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 1e-72 43
escN AAK26715.1 EscN Virulence LEE Protein 2e-72 43
escN AAL57542.1 EscN Virulence LEE Protein 2e-72 43
escN CAI43874.1 EscN protein Virulence LEE Protein 8e-73 43
escN CAC81862.1 EscN protein Virulence LEE II Protein 7e-73 43
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-64 41
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-64 41
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 5e-62 41
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 4e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG1254 Protein 6e-84 48
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG0515 Protein 1e-73 47
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG2144 Protein 1e-85 46
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG2499 Protein 1e-81 46
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG0048 Protein 2e-85 45
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG0192 Protein 1e-81 45
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG2331 Protein 2e-79 44
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG0390 Protein 4e-82 44
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG0812 Protein 4e-73 44
S58_17270 YP_007511321.1 flagellum-specific ATP synthase VFG0730 Protein 5e-73 44