|
Name : HydHO_0246 (HydHO_0246) Accession : YP_007499625.1 Strain : Hydrogenobaculum sp. HO Genome accession: NC_020411 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : - COG ID : - EC number : - Position : 213749 - 215428 bp Length : 1680 bp Strand : - Note : IMG reference gene:2506377135; PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPT DNA sequence : ATGCCGGATATAGAGAGGAACTTAAGGTTTTTAAAATTTTTACAAAATGAAGGGCTCATAGATGACAATACGGTAAAAGA GTTAAAAGACCTCGATATAGACATAGTAAGTTATCTTGTAGAAACTAAAAAAATAACTGAGCAAGATCTTCTTAACGCGT ATTCAAAAATGTTTAAACTTGTAGATAAAGATGGTAGTGTAGTAAATATAGATAAAATAGATAAAAATCTTTTAAACTTA TTTCCTCAAGATTTTATAGTAAAAAATAAAATAATACCTATTTCTATGTCTGATAATAGCGTTACAGTTGCTACATACAT GCCATATATAGATGAAAATCAAATAAAGTACATTACCAAAAAGCCAAATGTAATAACCTGGTATACAACGCCGTCAAAAA TAAAAAATATTATAGAGAATCTCTTTCATTCTGGATCTATAGACTTAAACGCAGAAGAAGTATATATAGAAGCACAACAA GAATACAATATCAATATAGAAAAATTAGTAGAACAATCAAGCGAAAGTGCAATTGTAAAGTTGGCTGATTCTATACTCTA TAGAGCTGTTAAAGACGGTGCTTCTGATATACATATAGAGCCTCAGGAAAAAGAAATTGTTCTAAGATTTAGAATAGATG GAATGCTAAAAAAAATAGACACTTACCCAACAAATATAAAAGACCCGCTCGTATCTAGGTTTAAAATATTGGCAAACCTT GATATATCAGAAAGGAGAAAGCCCCAAGACGGAATCATAAAAATAAGGATATCAAACAAAAAGGTGCAACTAAGAGTATC AACGCTTCCTACAATATTTGGTGAAAAATTAGTCATGAGAGTGCAGTTTCCCGATGAGTTTTCAGCTTTAAAACTAGAAA CGCTTGGATTTGAAGAAGATGAAGTGAAAAAACTAAAGCAAACTTACACTAAACCTTATGGGATAATACTAGTGGTAGGA CCCACAGGTAGCGGAAAAACTACAACGCTTTATTCAATACTACAAGACTTAAACAAAGAAGATGTAAACATAGTAACCGC CGAAGACCCCGTAGAAATAAATATACCAGGGCTTAATCAAGTTCAAATAGATGAAAAAGTAGGAAGGACTTTTGAAGCGG TTTTAAGATCGTTTTTGAGGCAAGACCCAGATATTATGCTTGTAGGTGAAATAAGAGATGCCATAACAGCTGAAATAGCT ATAAAATCCTCTCTTACTGGGCACTTAGTCTTATCAACGCTTCATGTAAACGATGCACCAAGCACAGTGGCGAGGCTTAT AGATATGGGAATAGAACCATTTTTAATATCATCTTCACTTTTGGCAGTATCTGCTCAAAGGCTTGTTAGAAAGTTATGTC CACACTGCAAAATACCATATGAGCCCACAAAAGAAGAAAGAGAATATTATGGCATCACTGCTGATGTAATATATAAACCA AACAAACAAGGTTGTGAATACTGCAACCACTTAGGTTATAAAGGAAGAACTGTAATAGCAGAACTAATGTTTGCAGATAA CGAAATAAGAGAGGCTATAAACCAAAGAAAAACCACAGAAGAAATAAGAGAAATAGCTATTAAAAAAGGTATGAAAACCT TGTTTCAGTCTGGTATAATAAAAGTAAACAAAGGAATTACATCTTTAGAAGAGGTGTTAAGAGTGTCTATACAAGATTAA Protein sequence : MPDIERNLRFLKFLQNEGLIDDNTVKELKDLDIDIVSYLVETKKITEQDLLNAYSKMFKLVDKDGSVVNIDKIDKNLLNL FPQDFIVKNKIIPISMSDNSVTVATYMPYIDENQIKYITKKPNVITWYTTPSKIKNIIENLFHSGSIDLNAEEVYIEAQQ EYNINIEKLVEQSSESAIVKLADSILYRAVKDGASDIHIEPQEKEIVLRFRIDGMLKKIDTYPTNIKDPLVSRFKILANL DISERRKPQDGIIKIRISNKKVQLRVSTLPTIFGEKLVMRVQFPDEFSALKLETLGFEEDEVKKLKQTYTKPYGIILVVG PTGSGKTTTLYSILQDLNKEDVNIVTAEDPVEINIPGLNQVQIDEKVGRTFEAVLRSFLRQDPDIMLVGEIRDAITAEIA IKSSLTGHLVLSTLHVNDAPSTVARLIDMGIEPFLISSSLLAVSAQRLVRKLCPHCKIPYEPTKEEREYYGITADVIYKP NKQGCEYCNHLGYKGRTVIAELMFADNEIREAINQRKTTEEIREIAIKKGMKTLFQSGIIKVNKGITSLEEVLRVSIQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-86 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-86 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HydHO_0246 | YP_007499625.1 | type II secretion system protein E | VFG1876 | Protein | 1e-86 | 47 |
| HydHO_0246 | YP_007499625.1 | type II secretion system protein E | VFG0182 | Protein | 3e-85 | 47 |
| HydHO_0246 | YP_007499625.1 | type II secretion system protein E | VFG2048 | Protein | 1e-87 | 46 |
