Gene Information

Name : ydcI (BAM5036_0463)
Accession : YP_007496195.1
Strain : Bacillus amyloliquefaciens UCMB5036
Genome accession: NC_020410
Putative virulence/resistance : Unknown
Product : Putative RNA binding protein containing S1 RNA binding domain,YdcI
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 497421 - 499580 bp
Length : 2160 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : putative enzyme

DNA sequence :
ATGGAAACGTTAGCCCTTTTGAAAAAACAAATTGCTGAAGAAACAGCGTTATCCCAAAAACATGTCGAAAGTGTCATCCG
CCTGCTGGAAGACGGCAATACCGTCCCGTTTATTGCGCGGTACCGAAAAGAGCAGACCGGCTCAATGGACGAGGTGCAGA
TTCAGGCAATCTCCGAGCGGTGGCAATACATACAAAACCTGACGCAGCGGAAAGAAGAAGTCATCAGATTGATCTCCGAG
CAGGACAAGCTGACGGACGGGCTGAAGCAAAAAATCGAACAAGCGGTGAAGCTTCAGGAAGTCGAGGATTTATACCGTCC
CTTCAAACAAAAACGGAAAACAAAAGCCACCGTCGCCAAAAGCAAAGGCCTTGAACCGCTTGCGGACTATATTCTTTCTC
TCCCGAAAGAAAACCGCCTTCACGACGTCGCTGATCAATATATCAGTGCAGAAAAAGAAGTCGCTTCAAGAGAGGAAGCC
ATTGAAGGCGCGAAGCACATCATAGCCGAACAAATCTCGGATGATCCTCATTTCAGAAAGTGGATCCGCCAGGAAACGTA
TAAAAAAGGAATTCTCACTTCCGCGGCAGGCAAGTCAGCCGCAGATGACGAGAAAAACGTCTATGAAATGTACTACGAGT
ACGAAGAGCCGATCCAAAAGGTCGTTCCTCACAGAGTGCTTGCGATGAACCGCGGTGAAAAAGAAGGCATTTTAAAGATT
GCGATCGAACCGCCCGCCGATCAGATAAAAGCTTATTTAGAAAAGCAAATTATCAAACACCGTGAAACGCCTGTGATAGA
AACGCTGAAAGAAGCCATTGAGGACAGTTACAAGCGCCTGATCCAGCCGGCTATTGAGCGTGACATCCGCAAAGAGCTGT
CAGAAAAAGCAGACGCCCAGGCGATCCATATTTTCGCTGAAAACCTGCGTAAGCTCCTGCTGCAGCCGCCGATGAAGGGA
AAAGTCGTGCTCGGCGTCGATCCGGCCTTCCGTACGGGGTGCAAACTGGCAGTCGTTGATGAGACGGGAAAAGTGCTGAA
AATCGACGTTATTTACCCGCACGCTCCCGTCAAAAAGACAGCGGAAGCCCGGAAAAAAATCAAAGAATTGCTGGACCGGT
ACGAAGTCGAGGTTGTGGCGATCGGAAACGGCACGGCATCACGGGAGACAGAGCAATTCGTCGTTGATGTGCTGAAAGAA
ACAGAGCGGGACATTTATTATGTCATCGTCAATGAGGCCGGAGCAAGCGTGTATTCCGCGTCAGAAATCGCCCGTGAGGA
ATTTCCGGATTTTCAGGTCGAAGAGCGCAGCGCCGTCTCCATCGCGCGGAGATTGCAGGACCCGCTGGCCGAGCTTGTGA
AAATTGATCCTAAATCCGTCGGTGTCGGGCAATACCAGCATGATGTCAGCCAAAAGCATTTAAACGAATCTCTCCGTTTT
GTCGTAGAGACCGTCGTCAACCAAGTCGGGGTGAATGTCAATACAGCATCAGCCGCGCTGCTTCAATATGTAGCCGGGTT
ATCCAAAACCGTTGCCGGCAATATCGTTAAAAAAAGGGAAGAGCTCGGAAAATTTACAAACCGCAAAGAGCTGAAAGAAA
TCCCGCGTCTCGGCGCAAAAACATATGAACAGTGCATCGGCTTTTTGAGAGTGCCCGGAGGACGGGAGCCGCTCGACCGC
ACCGGGATACACCCGGAAAGCTATAAAGAGACAAAGGCGCTGCTCAAAAAACTGCAGCTCACTGCGGATCAGATCGGAAG
CGCGGACGCAAAAGAGAAAATAAGCGCATTGCCGCTGTCTGAAACGGCTGAAGAGCTCGGTATAGGGGAGATTACGCTTG
CGGATATTTGCGGGCAGCTGACAAGGCCGGAGCGAGATCCCCGTGACGAAGTGCCGAAGCCTTTGCTGAAAAAAGACGTT
CTGCAGCTTGAGGATTTAAAGGAAGGAATGGAATTGCAGGGCACCGTCCGCAACGTTGTAGACTTCGGCGCTTTCGTCGA
TATCGGCGTCAAGCAGGACGGGCTTGTGCACATCTCAAAACTGAGCAATCAATTCGTCAAACATCCTCTCGACGTCGTAT
CGGTCGGAGACATCGTCACCGTATGGGTCGAAGGGGTGGACGTGCAAAAAGGCAGAGTGTCGCTGTCTATGGTAAAATAA

Protein sequence :
METLALLKKQIAEETALSQKHVESVIRLLEDGNTVPFIARYRKEQTGSMDEVQIQAISERWQYIQNLTQRKEEVIRLISE
QDKLTDGLKQKIEQAVKLQEVEDLYRPFKQKRKTKATVAKSKGLEPLADYILSLPKENRLHDVADQYISAEKEVASREEA
IEGAKHIIAEQISDDPHFRKWIRQETYKKGILTSAAGKSAADDEKNVYEMYYEYEEPIQKVVPHRVLAMNRGEKEGILKI
AIEPPADQIKAYLEKQIIKHRETPVIETLKEAIEDSYKRLIQPAIERDIRKELSEKADAQAIHIFAENLRKLLLQPPMKG
KVVLGVDPAFRTGCKLAVVDETGKVLKIDVIYPHAPVKKTAEARKKIKELLDRYEVEVVAIGNGTASRETEQFVVDVLKE
TERDIYYVIVNEAGASVYSASEIAREEFPDFQVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQKHLNESLRF
VVETVVNQVGVNVNTASAALLQYVAGLSKTVAGNIVKKREELGKFTNRKELKEIPRLGAKTYEQCIGFLRVPGGREPLDR
TGIHPESYKETKALLKKLQLTADQIGSADAKEKISALPLSETAEELGIGEITLADICGQLTRPERDPRDEVPKPLLKKDV
LQLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNQFVKHPLDVVSVGDIVTVWVEGVDVQKGRVSLSMVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
NMB0075 NP_273139.1 transcriptional accessory protein Tex Not tested IHT-A Protein 7e-121 43