Gene Information

Name : yydA (BAM5036_3633)
Accession : YP_007499286.1
Strain : Bacillus amyloliquefaciens UCMB5036
Genome accession: NC_020410
Putative virulence/resistance : Unknown
Product : Ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : -
COG ID : -
EC number : 2.1.1.-
Position : 3815906 - 3816385 bp
Length : 480 bp
Strand : -
Note : Evidence 4 : Homologs of previously reported genes of unknown function

DNA sequence :
GTGAATATCAATATTGTGACCATCGGAAAACTAAAAGAAAAATACCTCAAGCAAGGCATTGAAGAATACAAAAAACGACT
CTCAGCCTACGCAAAAATCGACATCATCGAACTCCCGGACGAAAAAGCTCCGGAAAACCTGAGCGACCAAGACATGAAAA
TCGTCAAAGACAAAGAAGGCGAACGCATCCTGGCCAAAATCAGCCCGGACACCCATGTCATCGCCCTCGCCATCGAAGGA
AAAATGAAAACATCCGAAGAACTGGCCGATACAATAGATAAGCTGGCGACATATGGAAAAAGCAAAATCACCTTCATCAT
CGGCGGCTCACTCGGCCTAAGCGACGCCGTCATGAAACGCGCAGACGACAAACTGTCATTCTCAAAAATGACGTTTCCTC
ATCAGCTGATGCGGCTGATTTTAGTGGAGCAGATTTATCGGGCTTTTCGGATTAATCGTGGGGAGCCTTATCATAAGTGA

Protein sequence :
MNINIVTIGKLKEKYLKQGIEEYKKRLSAYAKIDIIELPDEKAPENLSDQDMKIVKDKEGERILAKISPDTHVIALAIEG
KMKTSEELADTIDKLATYGKSKITFIIGGSLGLSDAVMKRADDKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 5e-47 64
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 6e-48 62
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 6e-48 62
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 6e-48 62
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-48 62
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 6e-48 62
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 8e-48 62
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 6e-48 62
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 2e-48 62
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 6e-48 62
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 6e-48 62
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 6e-48 62
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 6e-48 62
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 6e-48 62
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 3e-31 61
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 9e-48 61
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 1e-46 60
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-46 60
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 2e-43 59