Gene Information

Name : int (BN4_12618)
Accession : YP_007495002.1
Strain : Desulfovibrio piezophilus C1TLV30
Genome accession: NC_020409
Putative virulence/resistance : Unknown
Product : Integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2800617 - 2801837 bp
Length : 1221 bp
Strand : +
Note : -

DNA sequence :
ATGCCCCTGACAGTCAAGAAAATAGCATCGCTGAAACCGAAGAAAAAGCTATACCGTGTGGCAGACGCCGAGGGCCTTTG
TCTTGAGGTTACGCCAACGGGTTCCAAGTTGTGGCGGCTTCGTTATCGTTACAACGACAAAGGCAAAATGATGGCCTTGG
GAAAGTTGACGGATGTTGACCTTGCACAGGCTCGTGACGAATGCAGAAAGTGGAAGCGGTGTTTACGGGAAGGCTTCGAC
CCTGCGCTTGTAAAAAAAGAAGAGGACGCGAGGTCAAGCGGCAAGGATAGCTTTGAAACTGTCACCCGTGAATGGTTTGC
CAAGTTCAAGCAAAAATGGGCTGAGCAAACCGGCGTTCGGAAACTAGCCCGCCTTGAAAGTCATGTTTTTCCATTGATAG
GTTCTCTCCCCATCGACAAGGTGGACGCTCCACAAATACGCCGCGTGGTTCTTCGTCTTGAGAGTCTGGAAAAACTTCAC
ACTGCCCACCGTGTAAAAAATATCATTGGCGAGATCATGCGTTACGCTGTCGCAATGGGTTTGATTCTACACAATCCCGT
TCCTGACCTTGCCGGAGTCTTGCCGCCTACCAAAGAGATACACCGAGCTAGCATTGTCGATCCTAAAGGCATAGGTGGCC
TTCTGAGGGCCATAGACGAATATCAAGGGAGCCTTGTTACTCGTTGCGCCTTGAAACTTGCTCCAATTACGTTTGTACGT
CCGGGGGAACTTCGCCATGCCGAATGGTCGGAAATCGATTATGAAGGCAAGGAGTGGCGCATACCTGCCGAGAAAATGAA
GATGAAGCGGCCTCATGTTGTTCCGCTTTCTCGTCAAGCTGTCGAGGTATTGAAAGAGGTTGAATTGGTTACTGGTCATG
GTGGCTATATCTTTCCGTCTGAACGGTCCTCGGCTCGGCCCATGAGCAACAACACCATTAACGCCGCGCTACGCCGTATG
GGGTACACCAAGGACGAAATGACGGGGCATGGCTTTCGCTCCATGGCGTCAACCAACCTTAACGAATTGGGGTTCCATCC
TGACCATATTGAACGGCAGCTTGCCCATGTGGAGGCAAACAGAGTTCGGGCGGCTTACAACTACGCCGAGCATTTGGTGG
AACGTAAGAAAATGATGCAAGCGTGGGCTGACTGGCTGGATGGGGTGAAGGCCGGGGGTAAGGTTATTCCTTTGAAGTCA
GCTAGCGGTAGTGGAGTATAA

Protein sequence :
MPLTVKKIASLKPKKKLYRVADAEGLCLEVTPTGSKLWRLRYRYNDKGKMMALGKLTDVDLAQARDECRKWKRCLREGFD
PALVKKEEDARSSGKDSFETVTREWFAKFKQKWAEQTGVRKLARLESHVFPLIGSLPIDKVDAPQIRRVVLRLESLEKLH
TAHRVKNIIGEIMRYAVAMGLILHNPVPDLAGVLPPTKEIHRASIVDPKGIGGLLRAIDEYQGSLVTRCALKLAPITFVR
PGELRHAEWSEIDYEGKEWRIPAEKMKMKRPHVVPLSRQAVEVLKEVELVTGHGGYIFPSERSSARPMSNNTINAALRRM
GYTKDEMTGHGFRSMASTNLNELGFHPDHIERQLAHVEANRVRAAYNYAEHLVERKKMMQAWADWLDGVKAGGKVIPLKS
ASGSGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-66 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-66 43
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-60 42
int AAK00456.1 Int Not tested SHI-1 Protein 2e-57 42
int CAC81896.1 integrase Not tested LEE II Protein 5e-56 42
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 6e-60 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 6e-60 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-59 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-59 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-59 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 7e-60 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-58 42
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-62 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 8e-59 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-59 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-59 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-59 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-59 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-59 42
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 6e-58 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-58 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-58 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 8e-59 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 8e-59 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 8e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int YP_007495002.1 Integrase VFG1536 Protein 3e-60 42
int YP_007495002.1 Integrase VFG0626 Protein 3e-60 42
int YP_007495002.1 Integrase VFG1693 Protein 3e-59 42