Gene Information

Name : H175_ch0606 (H175_ch0606)
Accession : YP_007477068.1
Strain : Bacillus thuringiensis IS5056
Genome accession: NC_020376
Putative virulence/resistance : Virulence
Product : sphingomyelinase C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 689180 - 690226 bp
Length : 1047 bp
Strand : +
Note : -

DNA sequence : 
GTGAAAGGTAAATTGCTAAAAGGTGTACTTAGCTTAGGGGTTGGTTTAGGAGCTTTATATAGCGGAACTTCAGCTCAAGC
AGAAGCATCTACAAATCAAAATGATACATTAAAAGTGATGACGCATAATGTATATATGCTATCAACAAACTTATATCCAA
ACTGGGGACAAACTGAGCGTGCTGATTTAATCGGGGCGGCAGATTATATAAAGAATCAAGATGTTGTTATATTAAATGAA
GTGTTTGATAATAGTGCCTCAGATCGTTTATTAGGCAATTTGAAGAAAGAATATCCAAATCAAACAGCAGTATTAGGTCG
TAGTAGTGGAAGCGAATGGGATAAAACGTTAGGGAACTATTCATCTTCAACTCCTGAAGATGGTGGCGTTGCGATTGTGA
GCAAATGGCCAATCGCTGAAAAGATTCAATATGTATTTGCAAAAGGATGCGGGCCAGATAATTTATCGAATAAAGGATTT
GTATACACGAAAATTAAGAAAAATGATCGTTTCGTTCACGTGATTGGGACGCATTTGCAGGCTGAAGATAGTATGTGCGG
AAAAACTTCACCAGCATCTGTACGTACGAACCAATTAAAAGAAATTCAAGATTTTATTAAAAATAAAAATATACCAAATA
ATGAGTATGTGTTAATTGGTGGTGATATGAACGTAAATAAGATAAATGCAGAGAACAATAATGATTCAGAGTATGCATCT
ATGTTTAAAACATTGAACGCTTCTGTACCATCTTATACTGGACATACAGCGACTTGGGATGCAACGACAAACAGTATTGC
AAAATATAATTTCCCTGATAGTCCTGCCGAATATTTAGATTATATTATTGCAAGCAAAGACCATGCGAACCCATCGTATA
TAGAGAATAAGGTGTTACAGCCGAAATCTCCACAATGGACTGTTACATCGTGGTTCCAAAAATATACGTATAATGATTAC
TCTGATCATTGCGAATTGCATAATATCAACCTTTTAAAGGGCGTAGGTCACGAATTGGTAACGAAAATGATAAATCTTGT
TCCATAA

Protein sequence : 
MKGKLLKGVLSLGVGLGALYSGTSAQAEASTNQNDTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNE
VFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGF
VYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYAS
MFKTLNASVPSYTGHTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDY
SDHCELHNINLLKGVGHELVTKMINLVP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlb NP_646757.1 truncated beta-hemplysin Not tested ¥ÕSa3 Protein 2e-69 59
hlb NP_375112.1 hypothetical protein Not tested ¥ÕSa3 Protein 5e-69 58
truncated-hlb NP_372527.1 hypothetical protein Not tested ¥ÕSa3 Protein 3e-69 58
unnamed CAA70683.2 sphingomyelinase-c Virulence LIPI-2 Protein 4e-76 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H175_ch0606 YP_007477068.1 sphingomyelinase C VFG1798 Protein 8e-77 59
H175_ch0606 YP_007477068.1 sphingomyelinase C VFG0674 Protein 2e-76 55