Gene Information

Name : CFSAN001992_04635 (CFSAN001992_04635)
Accession : YP_007470685.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Virulence
Product : two component system sensor kinase SsrB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 887343 - 887981 bp
Length : 639 bp
Strand : +
Note : COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

DNA sequence : 
ATGAAAGAATATAAGATCTTATTAGTAGACGATCATGAAATCATCATTAACGGCATTATGAATGCCTTACTACCCTGGCC
TCATTTTAAAATTGTAGAACATGTTAAAAATGGTCTTGAGGTTTATAATGCCTGTTGCGCATACGAGCCTGACATACTTA
TCCTTGATCTTAGCTTACCTGGCATCAATGGCCTGGATATCATTCCCCAATTACATCAGCGTTGGCCAGCAATGAATATT
CTGGTTTACACAGCATACCAACAAGAGTATATGACCATTAAAACTTTAGCCGCAGGTGCTAATGGCTATGTTTTAAAAAG
CAGTAGTCAGCAAGTTCTGTTAGCGGCATTGCAAACAGTCGCAGTAAACAAGCGTTACATTGACCCGACGTTGAATCGGG
AAGCTATCCTGGCTGAATTAAACGCTGACACGACCAATCATCAACTGCTTACTTTGCGCGAACGTCAGGTTCTTAAACTT
ATTGACGAGGGGTATACCAATCATGGGATCAGCGAAAAGCTACATATCAGTATAAAAACCGTCGAAACACACCGGATGAA
TATGATGAGAAAGCTACAGGTTCATAAAGTGACAGAGTTACTTAACTGCGCCCGAAGAATGAGGTTAATAGAGTATTAA

Protein sequence : 
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLPGINGLDIIPQLHQRWPAMNI
LVYTAYQQEYMTIKTLAAGANGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKL
IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLIEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssrB CAB09344.1 SsrB Virulence SPI-2 Protein 3e-88 100
ssrB NP_456137.1 putative two-component response regulator Virulence SPI-2 Protein 3e-97 100
ssrB NP_805062.1 two-component response regulator Virulence SPI-2 Protein 3e-97 100
ssrB NP_460356.1 transcriptional activator Virulence SPI-2 Protein 3e-97 100
ssrB YP_216399.1 secretion system transcriptonal activator Virulence SPI-2 Protein 5e-97 99
YPO0255 YP_002345335.1 two-component response regulator Not tested Not named Protein 7e-48 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_04635 YP_007470685.1 two component system sensor kinase SsrB VFG0492 Protein 1e-97 100