Gene Information

Name : CFSAN001992_04585 (CFSAN001992_04585)
Accession : YP_007470675.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Virulence
Product : pathogenicity island 2 effector protein SseD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 877155 - 877742 bp
Length : 588 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAGCGAGTAACGTAGCACTGGTATTACCAGCGCCTTCCTTGTTAACGCCTTCTTCCAGTCAAGCTCCCTCCGGGGA
GGGAATGGGTACTGAATCAATGCTTCTGTTATTTGATGATATCTGGACGAAGCTAATGGAGCTTGCCAAAAAGTTGCGCG
ATATCATGCGCAGCTATAACGTAGTAAAACAACGGCTGGGCTGGGAACTGCAAGTCAATGTTTTACAGACGCAAATGAAA
ACAATTGATCAAGCGTTTAAAGCATCAATGATTACTGCGGGTGGCGCAATATTGTCGGGAGTGCTGACGATAGGATTAGG
GGCTGTAGGCGGGGAAACCGGTCTTATAGCGGGTCAAGCCGTAGGCCACACAGCTGGGGGCGTCATGGGCCTGGGGGCTG
GTGTAGCGCAACGTCAAAGTGATCAAGATAAAGCGATTGCCGACCTGCAACAAAATGGGGCCCAATCTTATAATAAATCC
CTGATGGATATTATGGAGAAAGCGGCTGAAATTATGCAGCAAATCATCGGTGTGGGGTCGTCACTGGTCTCGGTTCTTGC
TGAAATACTCCGGGCATTAACGAGGTAA

Protein sequence : 
MEASNVALVLPAPSLLTPSSSQAPSGEGMGTESMLLLFDDIWTKLMELAKKLRDIMRSYNVVKQRLGWELQVNVLQTQMK
TIDQAFKASMITAGGAILSGVLTIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKS
LMDIMEKAAEIMQQIIGVGSSLVSVLAEILRALTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseD YP_216409.1 secretion system effector protein SseD Virulence SPI-2 Protein 2e-63 96
sseD NP_460366.1 translocation machinery component Virulence SPI-2 Protein 2e-62 94
sseD NP_456127.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 2e-62 94
sseD NP_805072.1 pathogenicity island effector protein Virulence SPI-2 Protein 2e-62 94
sseD CAA12188.1 SseD Virulence SPI-2 Protein 1e-62 94
sseD AAC28882.1 SseD Virulence SPI-2 Protein 1e-61 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_04585 YP_007470675.1 pathogenicity island 2 effector protein SseD VFG0502 Protein 6e-63 94