Gene Information

Name : CFSAN001992_20220 (CFSAN001992_20220)
Accession : YP_007473756.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Unknown
Product : capsid portal protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4173872 - 4174894 bp
Length : 1023 bp
Strand : +
Note : COG5518 Bacteriophage capsid portal protein

DNA sequence : 
ATGAGCAAGCGCAAGCCACGCAAAGCAGTCGCCATGACCGCCAGTGCACCGCAAAAAATGGAGGCGTTCACCTTCGGTGA
GCCGGTGCCGGTACTCGATAAGCGCGACATTCTGGATTACGTCGAGTGCATCAGTAACGGCAAATGGTACGAGCCGCCGG
TCAGCTTCTCCGGGCTGGCAAAAAGCCTGCGCTCTGCAGTGCATCACAGCTCACCGATTTACGTTAAACGCAACGTGCTC
GCGAGCACCTACATTCCGCACCCGCTGCTGTCCCGTCAGGATTTCAGCCGCTTTGCGCTCGACTATCTGGTATTCGGTAA
CGCCTTTCTTGAGCAGCGCCACAGCGTCACCGGACAGTTAATCAAACTGCTGACTTCACCGGCAAAATACACCCGGCGCG
GGGTCGATGACTCGGTTTTCTGGTTTGTGGAAAACTTCACTCAGCCGCATGAGTTCGCACCCGATACCGTGTTCCACCTG
CTGGAGCCTGATATTAATCAGGAGATTTACGGCCTGCCTGAATATCTCAGTGCGCTTAATTCCGCATGGCTGAATGAATC
CGCGACGCTGTTCCGCCGCAAGTATTACCAGAACGGCGCGCACGCAGGTTACATCATGTATGTGACTGATCCGGCGCAAA
GCGCGACTGACGTCGAATCGCTGCGCGATGCAATGCGTAACTCTAAAGGGCTCGGCAACTTTAAAAACCTGTTTTTCTAC
TCACCGAACGGGAAACCGGACGGCATAAAAATCGTGCCATTGAGCGAAGTCGCCACAAAGGATGACTTTTTTAACATCAA
AAAAGCCAGCGCTGCCGACCTGATGGATGCGCACCGCGTACCGTTCCAGCTCATGGGCGGCAAGCCTGAGAATATTGGCT
CAATGGGTGACGTTGAGAAGGTGGCAAAGGTCTTTGTGCGTAACGAGTTATCGCCGCTACAGGACAGGTTCAGGGAGGTA
AACGACTGGCTCGGCATGGAGGTCATCAGGTTCAAAGAGTACACCCTCGACAACCCGGAATAA

Protein sequence : 
MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL
ASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTVFHL
LEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFY
SPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSMGDVEKVAKVFVRNELSPLQDRFREV
NDWLGMEVIRFKEYTLDNPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4628 NP_458710.1 probable capsid portal protein Not tested SPI-7 Protein 1e-106 65
t4321 NP_807917.1 capsid portal protein Not tested SPI-7 Protein 1e-106 65
unnamed ABR13463.1 predicted capsid packaging protein Not tested PAGI-6 Protein 3e-78 51