Gene Information

Name : CFSAN001992_19830 (CFSAN001992_19830)
Accession : YP_007473678.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Unknown
Product : phage portal protein, pbsx family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4101895 - 4102929 bp
Length : 1035 bp
Strand : -
Note : COG5518 Bacteriophage capsid portal protein

DNA sequence : 
ATGGGAAAGAGTAAGAAGAACCGCGCTGCGTCGACGAAACAGATCCAGCATAAAAGCCAGACTTCAGCCGAAGCATTCAG
CTTCGGTGATCCCGTTCCTGTTCTGGACCGCCGCGAACTGCTGGACTATGTGGAATGCGTGCAGATGGACCGCTGGTATG
AGCCGCCAGTAAGCTTTGACGGGCTGGCGCGAACCTACCGTGCCGCAGTGCATCACAGCTCTCCCATTGCGGTAAAACGC
AACATTCTGACCAGCACCTTTATCCCGCATCCACTTCTTAGCCAGCAGGCGTTCAGCCGGTTTGTGCAGGACTATCTGGT
ATTCGGTAATGCCTATCTGGAGAAGCGCACCAACCGACTCGGCGGCATTCTGTCGCTGGAGCCATCACTGGCGAAATACA
CCCGCCGCGGGATCGATTTAGACACCTACTGGTTTGTGCAATACGGCCTAACCACGCAGCCCTACGAGTTCACCAAAGGC
AGCATCTTTCACCTGATGGAGCCGGATTTAAACCAAGAGATTTACGGTCTGCCGGAATATCTGTCAGCTATCCCTTCCGC
CCTGCTGAATGAGTCCGCAACACTGTTCCGCCGGAAGTACTACATTAACGGTAGCCACGCAGGCTTCATCATGTACATGA
CTGACGCCGCGCAGAACCAGGAGGACGTGAACAACATCCGCCAGGCCATGAAAAGCGCCAAAGGTCCGGGTAACTTCCGC
AACCTGTTTATGTACTCACCCAACGGCAAAAAGGACGGGATTCAGATCATCCCGCTGTCAGAGGTCGCGGCAAAGGATGA
GTTTCTGAACATCAAGAACGTGAGCCGCGATGACATGATGGCAGCACACCGCGTGCCGCCGCAGATGATGGGGATTATGC
CGAGTAATGTTGGGGGGTTTGGGGATGTGGAGAAAGCCAGCCGCGTCTTTGTTCGTAACGAGTTGATACCTCTGCAGAAG
CGCCTTCAGGAATTGAACGACTGGCTTGGAGAAGATGTCATGCGTTTTGAAGATTATAATTTAGGTATTGAATGA

Protein sequence : 
MGKSKKNRAASTKQIQHKSQTSAEAFSFGDPVPVLDRRELLDYVECVQMDRWYEPPVSFDGLARTYRAAVHHSSPIAVKR
NILTSTFIPHPLLSQQAFSRFVQDYLVFGNAYLEKRTNRLGGILSLEPSLAKYTRRGIDLDTYWFVQYGLTTQPYEFTKG
SIFHLMEPDLNQEIYGLPEYLSAIPSALLNESATLFRRKYYINGSHAGFIMYMTDAAQNQEDVNNIRQAMKSAKGPGNFR
NLFMYSPNGKKDGIQIIPLSEVAAKDEFLNIKNVSRDDMMAAHRVPPQMMGIMPSNVGGFGDVEKASRVFVRNELIPLQK
RLQELNDWLGEDVMRFEDYNLGIE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4628 NP_458710.1 probable capsid portal protein Not tested SPI-7 Protein 2e-147 90
t4321 NP_807917.1 capsid portal protein Not tested SPI-7 Protein 2e-147 90
unnamed ABR13463.1 predicted capsid packaging protein Not tested PAGI-6 Protein 3e-90 56