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Name : CFSAN001992_18425 (CFSAN001992_18425) Accession : YP_007473401.1 Strain : Salmonella enterica CFSAN001992 Genome accession: NC_020307 Putative virulence/resistance : Virulence Product : fimbrial outer membrane usher protein StdB Function : - COG functional category : - COG ID : - EC number : - Position : 3810035 - 3812524 bp Length : 2490 bp Strand : + Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG CCTGCTGGACAGCGGGAACCTGTCCAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCGGTCAGAGTTGTACCGGTTGCCGGACGCGACGCG GCCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA CCTTCATTATCCCCCAGGCCTGGATGCGATATCAGGACCCGGACTGGATCCCCCCTTCACGCTGGAGCGACGGCGTCACC GCCGGCCTGCTCGATTACAGCCTGATGGTCAACCGCTATATGCCGCAGCAGGGGGAGACCTCTACCAGCTACAGCCTCTA CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGGTTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCAGGGCG CATCACAGTCCGATTTTTATCTGCCGCAGACGTATCTGTTCCGTGCCCTGCCAGCACTGCGCTCAAAACTGACGCTCGGA CAGACGTACCTCAGCTCCGCTATTTTTGACTCCTTCCGCTTTGCCGGGCTCACTTTGGCCAGCGATGAGCGCATGCTGCC GCCCTCTCTTCAGGGGTATGCCCCGAAAATCAGCGGCATTGCGAACAGTAATGCACAGGTTACCGTCAGCCAGAATGGCC GCATTCTGTACCAGACCCGGGTGTCGCCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGTAACCTGGAT GTCAGCGTCCGGGAAAGCGACGGTAGCGTCCGGACCTGGCAGGTCAACACGGCCAGCGTCCCCTTTATGGCACGCCAGGG ACAGGTTCGCTATAAGGTGGCCGCCGGACGTCCGCTGTACGGCGGGACGCATAACAACAGCACGGTCAGCCCTGACTTTC TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGCTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT GCCGCATGGGCAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTGTCCATGCCGGAGTACCTGCAGCGTCGGGCCACCGACGGCGGC GATGCATGGCATGAAAAACAGAGCTACACCGTGACTTATAGCCAGTCCGTTCCGGTACTCAATATGAGCGCTGCCCTCTC GGTAAGCCGGCTCAATTACTGGAATGCGCAGTCCAACAATAACTACATGCTCAGCTTCAACAAAGTGTTCAGTCTCGGCG ACCTTCAGGGGCTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGGAGCCAGAACCAGGTCTACGCC ACCATCAGTATCCCGTGGGGAGACAGCCGCCAGGTGAGTTACAGCGTACAGAAAGATAACCGGGGCGGCCTGCAGCAGAC CGTGAATTACAGCGATTTCCATAACCCGGACACCACATGGAACATCAGCGCCGGTCATAACCGCTATGACACCGGCAGTA ACAGCAGCTTCAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGCCAGGCGGCAGCGGACGCCACCCTGCAGCCCGGGCAG TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACCGCCACCGCCCACGGCGCCGCCTTCAGCCAGTCGATGGCCGG GAATGAGCCTCGCATGATGATAGATACCGGAGACGTGGCCGGTGTACCGGTGAACGGCAACAGCGGGGTGACCAACCGCT TCGGGGTGGGCGTGGTGAGCGCCGGCAGCAGCTATCGGCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCGGAGGAC GTGGACGTCAGCAGCTCCGTCATCAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAGATTGACGCCAGCCAGGG GGAGCAGGTGCTCGGTCATATCCGGCTGGCTGATGGCGCCAGTCCACCGTTTGGCGCTCTGGTAGTGTCCGGGAAAAGCG GCAGAACCGCGGGGATGGTCGGAGATGACGGTCTGGCCTACCTGACAGGCCTCAGCGGGGAAGACCGCCGGACCCTGAAC GTGTCCTGGGATGGCCGGGTGCAGTGCAGACTCACCCTGCCGGAAACGGTGACACTCAGTCGGGGGCCGCTGTTACTGCC CTGCAGATAA Protein sequence : MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWIPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVSSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKSGRTAGMVGDDGLAYLTGLSGEDRRTLN VSWDGRVQCRLTLPETVTLSRGPLLLPCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 3e-125 | 41 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 4e-124 | 41 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 5e-124 | 41 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 4e-125 | 41 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 5e-125 | 41 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 5e-125 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CFSAN001992_18425 | YP_007473401.1 | fimbrial outer membrane usher protein StdB | VFG1548 | Protein | 2e-125 | 41 |
| CFSAN001992_18425 | YP_007473401.1 | fimbrial outer membrane usher protein StdB | VFG0884 | Protein | 2e-125 | 41 |
| CFSAN001992_18425 | YP_007473401.1 | fimbrial outer membrane usher protein StdB | VFG0895 | Protein | 2e-125 | 41 |
