Gene Information

Name : CFSAN001992_12590 (CFSAN001992_12590)
Accession : YP_007472256.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Virulence
Product : integral membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2561605 - 2562993 bp
Length : 1389 bp
Strand : -
Note : -

DNA sequence :
GTGAAGTATATAAATCATTACCGCTATTTGTTTGTCTGTTTTTTCCTTGCCATACTCCCTTTTTCCGCTTTATCTTTTCC
CGGTATAAGAGAGTATGTTTTTGATAACTTTATGGTTTCTGCAATTTACAATGGAGTCATTATTGCCATTTATATTACAG
GCTCTTTGTGTGCATTATTCACTATTTTTAAAAATATTTCAGCAAAAGACATATTAATAGCTCAGGACGCCAGCAGAAAA
AATAGTATTCTTTCTAACCTCAATCAGATTTTGTTTTCCGGAGAACCCAAACAGTGTGATTTCAATTTGCTGATGGAATT
AGATGACAATGTGTCTACCGCCCGTAACCAACGATTGTCATTTATTATGAGTTGTAGCAATGTGTCGACGCTTGTTGGCC
TGTTGGGGACGTTTGCGGGTCTGTCTATTACGATTGGTTCAATCGGGAATTTATTGAGCTCGCCATCAGATGTTGGCGGT
GATAATGCAAGTAATACACTCAATATGATCGTGACAATGGTAGCGTCGCTTTCTGAACCATTGAAAGGGATGAATACCGC
ATTTGTATCTTCTATCTATGGTGTTGTTTGCGCCATACTCCTGACCTCACAAAGTGTTTTTGTTCGCAGCTCCTATTCCC
TTGTTTCTACGGAAATCAAAAAATTAAAAATCATAAGCAACAGATCCAATAATAAACAACGAAGCCTGCGGGTTGAATCA
GAGACGCTTGTAGAATTTAAAGAGTTGTTTAAAGCGTTTTTTGATAACTACCTGACAGTTGAAAACTTACGGACGCAGGA
TGAAGAAAAGAAACGAGTGATGCTATCAGATAGCTTTGTCACTTTGCAAAACCGACTATCGGATAACTCAGCAAAACTGG
AACAACTTTCTACGCTGATTGATGGTTATCTGGTAAGCAGTAACGAAAATCTCAAAAAATTATCTGACGGTGTAATAACA
ATTACCTCTCGTTTATCTGAAGGTAATATCCTGCTTGCTGATAATAATGCACGGCTGGAGGCAATGAGTACAATACAAAA
TATTATAGACAAAAAGAATGATTCAATAATGGCATCAGTTGATAAATGTTATCAGGAATCTCTTTCACATGGTAAGACCA
TAAACGATATTGCCGCTGGCAGTGCCGATATTTCTCATACTCTCGATGGGCTGAGAAAAGAAATGGATGAGGATATGAAC
AATGTTCATTTAGCGCTATCCGATCTATCGGCTACTGATAAAAAGATTATTGCCAATACTAAAGAGATTAGTGCTGAAAT
GGTTAGCTACCGTGATACCTATATGCCATTAATGGAAAAAATAACATCTATGCACCAGGAAATAGTAAAGCAACGTTTGT
TAAACAAGGAGGAAAAAAATGAAGATTAA

Protein sequence :
MKYINHYRYLFVCFFLAILPFSALSFPGIREYVFDNFMVSAIYNGVIIAIYITGSLCALFTIFKNISAKDILIAQDASRK
NSILSNLNQILFSGEPKQCDFNLLMELDDNVSTARNQRLSFIMSCSNVSTLVGLLGTFAGLSITIGSIGNLLSSPSDVGG
DNASNTLNMIVTMVASLSEPLKGMNTAFVSSIYGVVCAILLTSQSVFVRSSYSLVSTEIKKLKIISNRSNNKQRSLRVES
ETLVEFKELFKAFFDNYLTVENLRTQDEEKKRVMLSDSFVTLQNRLSDNSAKLEQLSTLIDGYLVSSNENLKKLSDGVIT
ITSRLSEGNILLADNNARLEAMSTIQNIIDKKNDSIMASVDKCYQESLSHGKTINDIAAGSADISHTLDGLRKEMDEDMN
NVHLALSDLSATDKKIIANTKEISAEMVSYRDTYMPLMEKITSMHQEIVKQRLLNKEEKNED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
mac YP_219124.1 methyl-accepting chemotaxis protein Not tested SPI-4 Protein 0.0 99
STY4453 NP_458555.1 putative integral membrane protein Not tested SPI-4 Protein 0.0 98
STM4258 NP_463123.1 methyl-accepting chemotaxis protein Not tested SPI-4 Protein 0.0 98
siiB CAE11794.1 putative inner membrane protein Virulence SPI-4 Protein 0.0 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_12590 YP_007472256.1 integral membrane protein VFG0578 Protein 0.0 98