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Name : CFSAN001992_12580 (CFSAN001992_12580) Accession : YP_007472254.1 Strain : Salmonella enterica CFSAN001992 Genome accession: NC_020307 Putative virulence/resistance : Virulence Product : Leukotoxin secretion protein D Function : - COG functional category : - COG ID : - EC number : - Position : 2559022 - 2560299 bp Length : 1278 bp Strand : - Note : COG0845 Membrane-fusion protein DNA sequence : ATGAATAGAAGACAAAGCGATCATCTCATGATGATAATTATTTCTTTGACGATCTTAATTATTATCCTTACCTACTTTAT AGAAATTAATTCAGTGGTTCATGGTCAGGGCGTTATCACTACTAAAGATAATGCTCAGTTAATATCTCTTTCTAAAGGAG GAACGATACAAGATATTTATGTTGCCGAGGGTGATACTGTAAAAAAAGGAGAACTCCTTGCAAAGGTCGTTAACCTTGAT CTGCAAAAAGAATATCAAAGGTATAGAACTCAAAAAGGGTATCTGGATAAAGATGTTAACGAAATATCCTTCATTCTTGA TAAAGAAAATGAGAGTGGGTTGATTACCCTGGATGGCACCCGTTCTTTAAGCAATAAAGAGGTAAAAGCGAATATTGAAT TAGTGCATAGTCAGATAAGAGCTAAAGAGTTAAAAAAAACCTCTCTTGATTCTGAGATTAGCGGATTACAAGAGAAGCTA AGTTCGAAAGAAAAAGAACTAGCATTGCTTGCCGAAGAAATAAATATTCTTTCCCCACTGGTAAAAAAAGGAATTAGCCC ATATACCAATTTTCTTAACAAGAAACAGGCGTATATAAAAGTTAAGTCTGAAATTAATGATATTGAAAGTAGTATCACTT TAAAAAAAGATGATATTGAGCTGGTTGTTAATGATATTGAGGCGCTTAATAATGAATTGCGACTATCTTTATCTAAAATA ATATCTAAAAATCTTCAGGAACTTGAGGTTGTTAACTCTACATTAAAAGTAATAGAGAAGCAGATAAATGAGGAGGATAT CTATTCACCGGTTGACGGTGTAATTTATAAAATCAATAAAAGTGCCACTACTCATGGTGGTGTGATTCAGGCGGCGGACT TACTTTTTGAAATAAAACCAAAAGTAAGGACTATGCTGGCCGATGTGAAAATACTACCCAAATACCGTGACCAAATATAT GTAGATGAAGCCGTTAAGCTGGATGTCCAGTCAATTATCCAACCAAAGATAAAATCGTATAATGCGACTATCGATAATAT TAGCCCTGATTCCTATGAGGAAAATACCGGAGGAACAATTCAGCGTTATTATAAAGTAATTATTGCATTCGATGTTAATG AAGATGATTTACGGTGGTTAAAACCAGGTATGACTGTTGACGCCAGTGTAATTACCGGAAAACACAGCATTATGGAATAC CTGTTATCTCCCTTGATGAAAGGCGTGGACAAAGCCTTTTCAGAACCAGTTAATACTAAACGATTAGATACACCTTGA Protein sequence : MNRRQSDHLMMIIISLTILIIILTYFIEINSVVHGQGVITTKDNAQLISLSKGGTIQDIYVAEGDTVKKGELLAKVVNLD LQKEYQRYRTQKGYLDKDVNEISFILDKENESGLITLDGTRSLSNKEVKANIELVHSQIRAKELKKTSLDSEISGLQEKL SSKEKELALLAEEINILSPLVKKGISPYTNFLNKKQAYIKVKSEINDIESSITLKKDDIELVVNDIEALNNELRLSLSKI ISKNLQELEVVNSTLKVIEKQINEEDIYSPVDGVIYKINKSATTHGGVIQAADLLFEIKPKVRTMLADVKILPKYRDQIY VDEAVKLDVQSIIQPKIKSYNATIDNISPDSYEENTGGTIQRYYKVIIAFDVNEDDLRWLKPGMTVDASVITGKHSIMEY LLSPLMKGVDKAFSEPVNTKRLDTP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STM4260 | NP_463125.1 | cation efflux pump | Not tested | SPI-4 | Protein | 2e-175 | 100 |
| spi4_D | AAC26642.1 | HLYD family secretion protein | Virulence | SPI-4 | Protein | 1e-175 | 100 |
| siiD | CAE11796.1 | putative type-I secretion protein, putative inner membrane component | Virulence | SPI-4 | Protein | 1e-175 | 100 |
| SC4139 | YP_219126.1 | membrane permease, cation efflux pump | Not tested | SPI-4 | Protein | 2e-175 | 100 |
| STY4457 | NP_458557.1 | putative type-I secretion protein | Not tested | SPI-4 | Protein | 9e-175 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CFSAN001992_12580 | YP_007472254.1 | Leukotoxin secretion protein D | VFG0580 | Protein | 8e-176 | 100 |
