Gene Information

Name : CFSAN001992_12555 (CFSAN001992_12555)
Accession : YP_007472249.1
Strain : Salmonella enterica CFSAN001992
Genome accession: NC_020307
Putative virulence/resistance : Resistance
Product : DNA-binding transcriptional regulator SoxS
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2537181 - 2537504 bp
Length : 324 bp
Strand : +
Note : COG2207 AraC-type DNA-binding domain-containing proteins

DNA sequence : 
ATGTCGCATCAGCAGATAATTCAGACCCTTATCGAATGGATTGATGAACATATCGACCAACCGCTAAACATTGATGTGGT
GGCAAAAAAATCGGGCTACTCCAAGTGGTATTTGCAGCGGATGTTTCGTACGGTAACGCATCAAACATTAGGCGAGTATA
TTCGCCAGCGCCGTCTCCTGTTGGCGGCCGTTGAGCTACGAACGACCGAGCGCCCGATTTTTGATATCGCGATGGACCTG
GGCTATGTATCGCAGCAAACCTTCTCGCGTGTATTCCGCCGCGAGTTCGATCGCACTCCCAGCGATTACCGTCACCGCCT
GTAG

Protein sequence : 
MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDL
GYVSQQTFSRVFRREFDRTPSDYRHRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 1e-46 100
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 4e-21 50
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 4e-21 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene4488. Protein 5e-47 100
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS BAC0371 Protein 7e-46 96
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS NC_002695.1.914293.p Protein 7e-46 96
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP000034.1.gene4505. Protein 1e-45 95
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP001918.1.gene327.p Protein 4e-45 95
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP000647.1.gene4499. Protein 3e-44 91
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS NC_010558.1.6276025. Protein 2e-21 50
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene612.p Protein 4e-25 49
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP000647.1.gene1624. Protein 7e-20 43
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP001918.1.gene2033. Protein 4e-20 43
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP001138.1.gene1637. Protein 5e-20 42
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS BAC0560 Protein 4e-20 42
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS NC_002695.1.917339.p Protein 4e-20 42
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS CP000034.1.gene1596. Protein 4e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS VFG0585 Protein 4e-47 100
CFSAN001992_12555 YP_007472249.1 DNA-binding transcriptional regulator SoxS VFG1038 Protein 2e-21 50